PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_4660V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 389aa    MW: 43597.9 Da    PI: 6.3238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_4660V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.3e-55201471128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv++yL++k+++ ++++ ++i evd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdk+v
  Pp3c26_4660V3.3.p  20 LPPGFRFHPTDEELVSYYLTRKIRNPDFSV-RAIGEVDLNKCEPWDLPVKATFGEKEWYFFSLRDRKYPTGLRTNRATEKGYWKATGKDKDV 110
                        79****************************.89***************888889************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ +++lvg+kktLvfy+grapkgekt+W+mheyr+
  Pp3c26_4660V3.3.p 111 LRSgDHSLVGMKKTLVFYRGRAPKGEKTSWIMHEYRV 147
                        *9967778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6415175IPR003441NAC domain
PROSITE profilePS5100560.50320174IPR003441NAC domain
PfamPF023656.6E-2921147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATMCVGKNS LEMQGSNMEL PPGFRFHPTD EELVSYYLTR KIRNPDFSVR AIGEVDLNKC  60
EPWDLPVKAT FGEKEWYFFS LRDRKYPTGL RTNRATEKGY WKATGKDKDV LRSGDHSLVG  120
MKKTLVFYRG RAPKGEKTSW IMHEYRVESD SSNQTNQELP RSKDEWVVCR VFYKNGGGRH  180
KYVLHSGLDS LPNNSDSAIP GHLESSPNPS VNEDGDCDTR VKGAEREVTW MGGPKLGVSI  240
TPTRLKSIAA SSPDTNISLY NQNPNFLDFG ISPHGAMSNM TSLKSFNRNG NRMRLKDEPY  300
YACEGEDGAQ TNQGLGLDYS WCGGVIYQDM SLEGPIAPFL SLTAEIDCIT ESFSEEQQAR  360
PPSRIRSLSG VPEIHGPMDT LQEIMWAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-561617913170NO APICAL MERISTEM PROTEIN
1ut4_B2e-561617913170NO APICAL MERISTEM PROTEIN
1ut7_A2e-561617913170NO APICAL MERISTEM PROTEIN
1ut7_B2e-561617913170NO APICAL MERISTEM PROTEIN
3swm_A2e-561617916173NAC domain-containing protein 19
3swm_B2e-561617916173NAC domain-containing protein 19
3swm_C2e-561617916173NAC domain-containing protein 19
3swm_D2e-561617916173NAC domain-containing protein 19
3swp_A2e-561617916173NAC domain-containing protein 19
3swp_B2e-561617916173NAC domain-containing protein 19
3swp_C2e-561617916173NAC domain-containing protein 19
3swp_D2e-561617916173NAC domain-containing protein 19
4dul_A2e-561617913170NAC domain-containing protein 19
4dul_B2e-561617913170NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366244.10.0NAC domain-containing protein 92-like
RefseqXP_024366245.10.0NAC domain-containing protein 92-like
RefseqXP_024366246.10.0NAC domain-containing protein 92-like
RefseqXP_024366247.10.0NAC domain-containing protein 92-like
RefseqXP_024366249.10.0NAC domain-containing protein 92-like
RefseqXP_024366250.10.0NAC domain-containing protein 92-like
TrEMBLA0A2K1IBV90.0A0A2K1IBV9_PHYPA; Uncharacterized protein
STRINGPP1S159_57V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.25e-79NAC domain containing protein 80