PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 186aa MW: 21353.5 Da PI: 5.015

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c26_4450V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.9	1.7e-54	14	118	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql +fw++q +e+++dfk h+lPlarikki+k+dedvkmi+aeaPvl+skace+fileltlrsw+h+eenkrrtl+++dia a+tr dif Pp3c26_4450V3.2.p 14 QLSQFWQQQmqeMEQVNDFKTHQLPLARIKKIMKSDEDVKMIAAEAPVLFSKACEMFILELTLRSWIHTEENKRRTLQRNDIAGAITRGDIF 105 7999*998889*************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivprdelk Pp3c26_4450V3.2.p 106 DFLVDIVPRDELK 118 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.04E-32	11	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.9E-37	27	100	IPR009072	Histone-fold
Pfam	PF00808	2.1E-21	36	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MQPQLHYQQI QKQQLSQFWQ QQMQEMEQVN DFKTHQLPLA RIKKIMKSDE DVKMIAAEAP 60 VLFSKACEMF ILELTLRSWI HTEENKRRTL QRNDIAGAIT RGDIFDFLVD IVPRDELKEE 120 DLGVPWTGVP GDGSVPYGGI FYPPMAGQQM HHSMGAPEMM VGQPPNPQMM YQPPQTAFVP 180 EQQQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-52	22	114	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RRTLQRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4165	0.0	gametophore\| protonema\| sporophyte

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024366452.1	1e-135	nuclear transcription factor Y subunit C-1-like isoform X3
Swissprot	Q9SMP0	7e-65	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2K1IBU6	1e-133	A0A2K1IBU6_PHYPA; Uncharacterized protein
STRING	PP1S159_32V6.2	1e-134	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	5e-58	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Pp3c26_4450V3.2.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]