PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_1490V3.2.p | ||||||||
Common Name | PpDof2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 498aa MW: 53164.1 Da PI: 8.1076 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.1 | 3.5e-37 | 153 | 211 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnv vG+grrknk Pp3c26_1490V3.2.p 153 PDKLIPCPRCDSLETKFCYYNNYNVNQPRHFCKSCQRYWTAGGTLRNVLVGAGRRKNKY 211 78999****************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 151 | 210 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-30 | 155 | 210 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.624 | 157 | 211 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 159 | 195 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MSKLRKWMMK EDRESSAGSA DTSAIKLFGA TIAVSITDSG VSSKAATSMN ATVAKPCVSL 60 TGSEEVDGAS MQLEADEMGS SLGSTCNESS AGALNTSNAE MAIKDVNGEA QVFATFTREL 120 PQSVMQTIHG MVSQQKQRAL TVEEKKEQCS KKPDKLIPCP RCDSLETKFC YYNNYNVNQP 180 RHFCKSCQRY WTAGGTLRNV LVGAGRRKNK YGASQMKQED AEGANSGITT VRMDHHEGAQ 240 PMLPCTINPY VIKVPPMQLP QLATQCSPRQ VSDVQSTVTT SCKAVSSASA FQPAVPEMST 300 DSVSKLRQRS GTESTFEGKE TSSSISSVSA TETTSKYVLS SRVPPQQQAD QQAVWTKNSV 360 PLGYFNGAWP YGYNIGIGGV GPIPDNPAMC GPHPAAALAS SNLPNGMSPP PVNVWTGMWA 420 SGMPSGMPGM AGVPAVPFGW NVCQGGWTLP WRPVPAVAVQ PPAEVMHSGS ARKWDSASSE 480 DRVRKMARVE IPEKDVL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12711 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626698 | 0.0 | AB626698.1 Physcomitrella patens PpDof2 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367108.1 | 0.0 | uncharacterized protein LOC112278168 | ||||
TrEMBL | H1ACS9 | 0.0 | H1ACS9_PHYPA; Dof transcription factor | ||||
STRING | PP1S149_180V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-35 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_1490V3.2.p |
Publications ? help Back to Top | |||
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