PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_13950V3.2.p | ||||||||
Common Name | PpVNS7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 43424 Da PI: 6.7941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.6e-51 | 10 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p+GfrFhPtdeelv +yL+ kv + + + +i+e+d+yk+ePwdL++ + +++++wyfFs++dkky+tg+r+nrat++g+Wkat Pp3c26_13950V3.2.p 10 PVGFRFHPTDEELVGYYLHGKVGRAQRDQ--FIQELDLYKIEPWDLHEvcrigdDAPENQSDWYFFSHKDKKYPTGNRANRATTAGFWKAT 98 89********************9999655..8**************854655554444677****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++++ +++++g++ktLvfy+grap+g+ktdW+mhe+rl Pp3c26_13950V3.2.p 99 GRDKPIHT-QRHVIGMRKTLVFYRGRAPHGQKTDWIMHEFRL 139 ********.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-54 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.084 | 9 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-27 | 10 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MNSNSNAPIP VGFRFHPTDE ELVGYYLHGK VGRAQRDQFI QELDLYKIEP WDLHEVCRIG 60 DDAPENQSDW YFFSHKDKKY PTGNRANRAT TAGFWKATGR DKPIHTQRHV IGMRKTLVFY 120 RGRAPHGQKT DWIMHEFRLD EGPGVVPNYE SDGWVVCRVF RKTKNFKTKS QDTSCSFEED 180 QQVGCDTLPA ELVSSPSHEK YVDSGGGAMN NILQLHHHYN FACKQEISVD DYNAHVHDPF 240 VENLHHLQEL HRSLEGSTNH PLAPCSSSTF RSQQQLSRMN SRDHENYSVA PAFHHGESSL 300 REFDETRPNV TQDGSLCSLN FPATYQGEDF WTLESARASL RRDQTLADMT CHVHLKRGTT 360 DHLSASHHEN LVHLWNVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-44 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-44 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-44 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-44 | 9 | 162 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-44 | 9 | 162 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-44 | 9 | 162 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-44 | 9 | 162 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898087 | 0.0 | AB898087.1 Physcomitrella patens PpVNS7 mRNA for NAC transcription factor PpVNS7, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366292.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Refseq | XP_024366293.1 | 0.0 | NAC domain-containing protein 76-like | ||||
TrEMBL | X5IAY9 | 0.0 | X5IAY9_PHYPA; NAC transcription factor PpVNS7 | ||||
STRING | PP1S6_458V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-73 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_13950V3.2.p |
Publications ? help Back to Top | |||
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