PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_13950V3.1.p
Common NamePpVNS7
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 379aa    MW: 43424 Da    PI: 6.7941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_13950V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.6e-51101392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         p+GfrFhPtdeelv +yL+ kv + + +   +i+e+d+yk+ePwdL++       + +++++wyfFs++dkky+tg+r+nrat++g+Wkat
  Pp3c26_13950V3.1.p  10 PVGFRFHPTDEELVGYYLHGKVGRAQRDQ--FIQELDLYKIEPWDLHEvcrigdDAPENQSDWYFFSHKDKKYPTGNRANRATTAGFWKAT 98 
                         89********************9999655..8**************854655554444677****************************** PP

                 NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         g+dk++++ +++++g++ktLvfy+grap+g+ktdW+mhe+rl
  Pp3c26_13950V3.1.p  99 GRDKPIHT-QRHVIGMRKTLVFYRGRAPHGQKTDWIMHEFRL 139
                         ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-547162IPR003441NAC domain
PROSITE profilePS5100555.0849162IPR003441NAC domain
PfamPF023655.9E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNSNSNAPIP VGFRFHPTDE ELVGYYLHGK VGRAQRDQFI QELDLYKIEP WDLHEVCRIG  60
DDAPENQSDW YFFSHKDKKY PTGNRANRAT TAGFWKATGR DKPIHTQRHV IGMRKTLVFY  120
RGRAPHGQKT DWIMHEFRLD EGPGVVPNYE SDGWVVCRVF RKTKNFKTKS QDTSCSFEED  180
QQVGCDTLPA ELVSSPSHEK YVDSGGGAMN NILQLHHHYN FACKQEISVD DYNAHVHDPF  240
VENLHHLQEL HRSLEGSTNH PLAPCSSSTF RSQQQLSRMN SRDHENYSVA PAFHHGESSL  300
REFDETRPNV TQDGSLCSLN FPATYQGEDF WTLESARASL RRDQTLADMT CHVHLKRGTT  360
DHLSASHHEN LVHLWNVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-44916217165NO APICAL MERISTEM PROTEIN
1ut4_B7e-44916217165NO APICAL MERISTEM PROTEIN
1ut7_A7e-44916217165NO APICAL MERISTEM PROTEIN
1ut7_B7e-44916217165NO APICAL MERISTEM PROTEIN
3swm_A7e-44916220168NAC domain-containing protein 19
3swm_B7e-44916220168NAC domain-containing protein 19
3swm_C7e-44916220168NAC domain-containing protein 19
3swm_D7e-44916220168NAC domain-containing protein 19
3swp_A7e-44916220168NAC domain-containing protein 19
3swp_B7e-44916220168NAC domain-containing protein 19
3swp_C7e-44916220168NAC domain-containing protein 19
3swp_D7e-44916220168NAC domain-containing protein 19
4dul_A7e-44916217165NAC domain-containing protein 19
4dul_B7e-44916217165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980870.0AB898087.1 Physcomitrella patens PpVNS7 mRNA for NAC transcription factor PpVNS7, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366292.10.0NAC domain-containing protein 76-like
RefseqXP_024366293.10.0NAC domain-containing protein 76-like
TrEMBLX5IAY90.0X5IAY9_PHYPA; NAC transcription factor PpVNS7
STRINGPP1S6_458V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.14e-73NAC 007
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]