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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pp3c26_12400V3.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family |
C3H |
| Protein Properties |
Length: 412aa MW: 42872.3 Da PI: 8.8576 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c26_12400V3.1.p | genome | COSMOSS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.8 | 6.5e-12 | 39 | 63 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G++Ck++H++
Pp3c26_12400V3.1.p 39 QPECQYYLKTGTCKFGATCKYHHPR 63
799********************96 PP
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| 2 | zf-CCCH | 39.6 | 8.5e-13 | 85 | 109 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C +++rtG CkyG +CkF+H++
Pp3c26_12400V3.1.p 85 EKECAYYMRTGSCKYGVTCKFHHPQ 109
689********************97 PP
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| 3 | zf-CCCH | 37.2 | 5e-12 | 241 | 266 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +C+++H++
Pp3c26_12400V3.1.p 241 GQPECQYYMKTGECKFGTTCRYHHPK 266
5799********************96 PP
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| 4 | zf-CCCH | 34.6 | 3.3e-11 | 287 | 311 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+ ++C+f+ r+G+Ck+G++CkF H+
Pp3c26_12400V3.1.p 287 GNPPCSFYTRYGICKFGPTCKFDHP 311
669*********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.1E-5 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.385 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-9 | 39 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-6 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 42 | 64 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.1E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.695 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-10 | 85 | 109 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-5 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.906 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.1E-9 | 242 | 266 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.02E-6 | 243 | 267 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 245 | 265 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.9E-6 | 285 | 312 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.047 | 285 | 313 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-8 | 289 | 311 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.49E-5 | 289 | 311 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 412 aa
Download sequence Send
to blast |
MWKGLWGLGV IGGFNHPANR KLGAVVARGK GEYPERVGQP ECQYYLKTGT CKFGATCKYH 60
HPREKAGSTG RVLLNVLGLP LRLGEKECAY YMRTGSCKYG VTCKFHHPQP ATVGGMVPVP 120
FGSGGGPSSP APQGYAAGAL PSWPLARSPY PLPRLQTHSS YGPMLPLQQG IMSMPGWSYQ 180
GPVGPADGHQ QGYVFGGAPQ GEHVSGFGPY MQGSSAVGLP AHQATQSVVG QKESLFPERL 240
GQPECQYYMK TGECKFGTTC RYHHPKDRST PSSTCHLSAM GLPLRPGNPP CSFYTRYGIC 300
KFGPTCKFDH PLVGSLTYSP SAGSLADVPV APYPIGSSPM NLAPSAYSEG LLERQGSGEA 360
GGYAEDGIGH HVTSRSNSEG GGVSSGSGVN GGVGGAGSGS GPTQAESVGK S*
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