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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c25_9030V3.3.p | ||||||||
Common Name | PHYPADRAFT_162989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 493aa MW: 55602.5 Da PI: 6.0851 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 22.6 | 1.3e-07 | 42 | 102 | 70 | 133 |
FLO_LFY 70 elG.ftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll 133 +lG ftv tLv+m++e+ ++ l e+ r +l v + + ik avr ++r+++e ++ + + Pp3c25_9030V3.3.p 42 KLGdFTVRTLVGMNEEDYQK----LFELLRSNLSVADFFAIKVAVREAKKRFNAETTSPRSAHCT 102 5555***********99765....77899************************988777776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 3.14E-9 | 127 | 170 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 10.822 | 127 | 172 | IPR001810 | F-box domain |
Pfam | PF00646 | 2.7E-6 | 129 | 160 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 7.4E-8 | 129 | 168 | No hit | No description |
SMART | SM00256 | 0.0011 | 133 | 173 | IPR001810 | F-box domain |
SuperFamily | SSF117281 | 1.44E-7 | 198 | 479 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0031146 | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | ||||
GO:0019005 | Cellular Component | SCF ubiquitin ligase complex | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MEDDCMESTP STPDYSTNNV YNARLECILR GFAKDPKALA HKLGDFTVRT LVGMNEEDYQ 60 KLFELLRSNL SVADFFAIKV AVREAKKRFN AETTSPRSAH CTPRAGNASG VARPAVDVAS 120 SSHIDVERPL PRLPEHVIHM VLAHLPVPSF LRMRVVCKDW WHLMYSTSFL ELCSKQPSER 180 SCFVFYERGK MVANGEGAIY IPSSNKWLKL SLSFLPCNLK EPVLVTGGGG LLCFVCNKSE 240 SGSVIVVCNP VTKSWRELPP LDVEDPEVFM WYLAMVSIVV DEHSNSYKVI LVSQTSYELY 300 DASWRTFSYS SLTKDWSRPS THHLGANVHN DTCEIWTPVE CNGVLFENFG TEYVWTYDLH 360 KGTWRHIELP SPSDSAEERG LVEIHGHLFR VLQTEDYETK DIQIWKLNPT DLSLTLVVFM 420 PPELAATFLD VSFTVLGIHS IAGNDALCFL SLKGQSALLY DLSERSWNWM PKFPLFKGSN 480 SCYLNLRLDI SA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17618 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365763.1 | 0.0 | F-box/kelch-repeat protein At5g15710-like | ||||
TrEMBL | A9S5R2 | 0.0 | A9S5R2_PHYPA; Predicted protein | ||||
STRING | PP1S50_82V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c25_9030V3.3.p |
Entrez Gene | 5924864 |
Publications ? help Back to Top | |||
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