PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_9030V3.3.p
Common NamePHYPADRAFT_162989
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LFY
Protein Properties Length: 493aa    MW: 55602.5 Da    PI: 6.0851
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_9030V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY22.61.3e-074210270133
            FLO_LFY  70 elG.ftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll 133
                        +lG ftv tLv+m++e+ ++    l e+ r +l v + + ik avr  ++r+++e ++ +  +  
  Pp3c25_9030V3.3.p  42 KLGdFTVRTLVGMNEEDYQK----LFELLRSNLSVADFFAIKVAVREAKKRFNAETTSPRSAHCT 102
                        5555***********99765....77899************************988777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.14E-9127170IPR001810F-box domain
PROSITE profilePS5018110.822127172IPR001810F-box domain
PfamPF006462.7E-6129160IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.4E-8129168No hitNo description
SMARTSM002560.0011133173IPR001810F-box domain
SuperFamilySSF1172811.44E-7198479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0019005Cellular ComponentSCF ubiquitin ligase complex
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEDDCMESTP STPDYSTNNV YNARLECILR GFAKDPKALA HKLGDFTVRT LVGMNEEDYQ  60
KLFELLRSNL SVADFFAIKV AVREAKKRFN AETTSPRSAH CTPRAGNASG VARPAVDVAS  120
SSHIDVERPL PRLPEHVIHM VLAHLPVPSF LRMRVVCKDW WHLMYSTSFL ELCSKQPSER  180
SCFVFYERGK MVANGEGAIY IPSSNKWLKL SLSFLPCNLK EPVLVTGGGG LLCFVCNKSE  240
SGSVIVVCNP VTKSWRELPP LDVEDPEVFM WYLAMVSIVV DEHSNSYKVI LVSQTSYELY  300
DASWRTFSYS SLTKDWSRPS THHLGANVHN DTCEIWTPVE CNGVLFENFG TEYVWTYDLH  360
KGTWRHIELP SPSDSAEERG LVEIHGHLFR VLQTEDYETK DIQIWKLNPT DLSLTLVVFM  420
PPELAATFLD VSFTVLGIHS IAGNDALCFL SLKGQSALLY DLSERSWNWM PKFPLFKGSN  480
SCYLNLRLDI SA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.176180.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365763.10.0F-box/kelch-repeat protein At5g15710-like
TrEMBLA9S5R20.0A9S5R2_PHYPA; Predicted protein
STRINGPP1S50_82V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]