PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c25_6940V3.1.p
Common NamePHYPADRAFT_235366, PPTIM3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 297aa    MW: 32542.5 Da    PI: 4.9289
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c25_6940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-21957149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       k+ien+s rqv fskRr g++KKA+ELS+LC+ ev vi+fs+ gk + +
  Pp3c25_6940V3.1.p  9 KKIENSSARQVCFSKRRGGLIKKASELSILCGSEVGVIVFSQAGKAFSF 57
                       68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.98E-26170IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.544161IPR002100Transcription factor, MADS-box
CDDcd002653.73E-36268No hitNo description
PRINTSPR004041.0E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRAKIEIKK IENSSARQVC FSKRRGGLIK KASELSILCG SEVGVIVFSQ AGKAFSFGHP  60
SIDYVIDKTL SGELSDSDSG TAVTDVASQK VQQVQALQHQ QKLLTKLLAS ERELQHRLLS  120
YPFWWQKPLT NYSPQELQHQ GQRLDGIYEM LMNRAAALQQ DMTVGTPVHS TQNRRTNTES  180
GDSSAIMEAC ATPNMAEMHA PEQEHETPID TQDFPIMTNL AALSGQAVGD SYDREVSEFV  240
EGCLPDGPLA AADHGQYVDM NSASPSWENL TQLSRSFDMA PVPKQDMETA KLELPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-14190191MEF2 CHIMERA
6bz1_B4e-14190191MEF2 CHIMERA
6bz1_C4e-14190191MEF2 CHIMERA
6bz1_D4e-14190191MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365143.10.0agamous-like MADS-box protein AGL61
TrEMBLA9SKN40.0A9SKN4_PHYPA; Type I MADS-domain protein PPTIM3
STRINGPP1S88_174V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-24AGAMOUS-like 61
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]