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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c25_5110V3.2.p | ||||||||
Common Name | PHYPADRAFT_100170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24181.1 Da PI: 4.7978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00054 | 76 | 111 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + ++ Lr++lP + +Ka+iL A +YI +Lq Pp3c25_5110V3.2.p 76 LDEQLSFLRSILPGT----TPGEEKASILMDAYQYIMKLQ 111 566777899999997....23479**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-7 | 68 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-8 | 70 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 7.64E-5 | 173 | 206 | No hit | No description |
PROSITE profile | PS51671 | 9.499 | 174 | 220 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAHGNGSSSH NSGEGAEQHT REIDEEYFSE LDSADSENDE VPKAFETNIP RGSGKRTYGV 60 IVNDLHAERR LKNAKLDEQL SFLRSILPGT TPGEEKASIL MDAYQYIMKL QKCVDELNTE 120 LIPLSTASAN MSAGNLIVGS LQEAPDTQST RSASVCVSYQ HPMVEVKREE GKLEVHIACM 180 NRPGLLVDIM GALDSRRITV VHANIACREN AQLEALRLEV * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365200.1 | 1e-163 | basic helix-loop-helix protein A-like | ||||
TrEMBL | A0A2K1IDU3 | 1e-162 | A0A2K1IDU3_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9U181 | 1e-161 | A9U181_PHYPA; Predicted protein | ||||
STRING | PP1S412_42V6.1 | 1e-162 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c25_5110V3.2.p |
Entrez Gene | 5947825 |
Publications ? help Back to Top | |||
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