PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c24_8270V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 672aa MW: 74766 Da PI: 4.4607 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.7e-51 | 5 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rFhPtdeelv yLk k+++kk+e + i+evd+yk+ePwdLp + v+++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+ Pp3c24_8270V3.2.p 5 LPPGYRFHPTDEELVGIYLKCKINNKKIED-NPIAEVDLYKCEPWDLPdmSGVRGNDQEWYFYSARDKKYPNGFRANRATSRGYWKSTGKDR 95 79*************************999.88**************95337777999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ + +g+kktLv+y grap+ge+tdWvmheyr+ Pp3c24_8270V3.2.p 96 TVKC--TISTGMKKTLVYYIGRAPRGERTDWVMHEYRM 131 **99..7889**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-55 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.255 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-26 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MARRLPPGYR FHPTDEELVG IYLKCKINNK KIEDNPIAEV DLYKCEPWDL PDMSGVRGND 60 QEWYFYSARD KKYPNGFRAN RATSRGYWKS TGKDRTVKCT ISTGMKKTLV YYIGRAPRGE 120 RTDWVMHEYR MEDKVYENLR GPQEPFVLAR VFKKSGSGPK NGEQYGAPFI EEPDSPLAGE 180 EDEVAPVEHP QPEVKVEPAL TPQVEYSESE IKPAVGNDMG FKELEDYLSD ELFETNDDNL 240 ADDNPDGVPD NTPRSAEDGI TLEDFIDEQS EADNVDDSWK EGVINNVDDF MLSDDISDGD 300 FDISSIPQHG MDINDMLAGP AEFVFTDGFL EINDLILPGG DLENFSSNIS AGEHEGLSSR 360 GSEIQLRPRR SSPRRMQFDP QGDTARRMLL MRHSESQQND LDRTLSSSRN LHTSASSRNL 420 SEFAERATSS LGFQRQSEEG CPVDGDLLSM AREDTGDLPD SDLWWNSVGT PPSSSSVDRQ 480 DATFPSHEGT YKSELDIASS ITDSASHYWQ TPDCLPSSSP PVADNPEKPP GKLSARINSL 540 LPPILPASAA ELPSFSNTYV TASDTHVTAL TITCSCSENG AKTVQAVMMN IAGGKVHQEM 600 MSGTWKPCTE DCKQQSCVQC SQRRKSQRPV AKGSKSGFVF VFLLGVVSTV IWFLLLRSSW 660 RMARFMHDLI L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-41 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-41 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-41 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-41 | 5 | 160 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-41 | 5 | 160 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-41 | 5 | 160 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-41 | 5 | 160 | 17 | 171 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15974 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024363310.1 | 0.0 | NAC domain-containing protein 91-like | ||||
TrEMBL | A0A2K1IG12 | 0.0 | A0A2K1IG12_PHYPA; Uncharacterized protein | ||||
STRING | PP1S73_182V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-67 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c24_8270V3.2.p |