PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c24_8270V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 672aa MW: 74766 Da PI: 4.4607

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_8270V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.7e-51	5	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppG+rFhPtdeelv yLk k+++kk+e + i+evd+yk+ePwdLp + v+++++ewyf+s rdkky++g r+nrat++gyWk+tgkd+ Pp3c24_8270V3.2.p 5 LPPGYRFHPTDEELVGIYLKCKINNKKIED-NPIAEVDLYKCEPWDLPdmSGVRGNDQEWYFYSARDKKYPNGFRANRATSRGYWKSTGKDR 95 79***********************999.88**********95337777999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ + +g+kktLv+y grap+ge+tdWvmheyr+ Pp3c24_8270V3.2.p 96 TVKC--TISTGMKKTLVYYIGRAPRGERTDWVMHEYRM 131 99..7889**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-55	3	154	IPR003441	NAC domain
PROSITE profile	PS51005	54.255	5	154	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MARRLPPGYR FHPTDEELVG IYLKCKINNK KIEDNPIAEV DLYKCEPWDL PDMSGVRGND 60 QEWYFYSARD KKYPNGFRAN RATSRGYWKS TGKDRTVKCT ISTGMKKTLV YYIGRAPRGE 120 RTDWVMHEYR MEDKVYENLR GPQEPFVLAR VFKKSGSGPK NGEQYGAPFI EEPDSPLAGE 180 EDEVAPVEHP QPEVKVEPAL TPQVEYSESE IKPAVGNDMG FKELEDYLSD ELFETNDDNL 240 ADDNPDGVPD NTPRSAEDGI TLEDFIDEQS EADNVDDSWK EGVINNVDDF MLSDDISDGD 300 FDISSIPQHG MDINDMLAGP AEFVFTDGFL EINDLILPGG DLENFSSNIS AGEHEGLSSR 360 GSEIQLRPRR SSPRRMQFDP QGDTARRMLL MRHSESQQND LDRTLSSSRN LHTSASSRNL 420 SEFAERATSS LGFQRQSEEG CPVDGDLLSM AREDTGDLPD SDLWWNSVGT PPSSSSVDRQ 480 DATFPSHEGT YKSELDIASS ITDSASHYWQ TPDCLPSSSP PVADNPEKPP GKLSARINSL 540 LPPILPASAA ELPSFSNTYV TASDTHVTAL TITCSCSENG AKTVQAVMMN IAGGKVHQEM 600 MSGTWKPCTE DCKQQSCVQC SQRRKSQRPV AKGSKSGFVF VFLLGVVSTV IWFLLLRSSW 660 RMARFMHDLI L*

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MARRLPPGYR FHPTDEELVG IYLKCKINNK KIEDNPIAEV DLYKCEPWDL PDMSGVRGND  60
QEWYFYSARD KKYPNGFRAN RATSRGYWKS TGKDRTVKCT ISTGMKKTLV YYIGRAPRGE  120
RTDWVMHEYR MEDKVYENLR GPQEPFVLAR VFKKSGSGPK NGEQYGAPFI EEPDSPLAGE  180
EDEVAPVEHP QPEVKVEPAL TPQVEYSESE IKPAVGNDMG FKELEDYLSD ELFETNDDNL  240
ADDNPDGVPD NTPRSAEDGI TLEDFIDEQS EADNVDDSWK EGVINNVDDF MLSDDISDGD  300
FDISSIPQHG MDINDMLAGP AEFVFTDGFL EINDLILPGG DLENFSSNIS AGEHEGLSSR  360
GSEIQLRPRR SSPRRMQFDP QGDTARRMLL MRHSESQQND LDRTLSSSRN LHTSASSRNL  420
SEFAERATSS LGFQRQSEEG CPVDGDLLSM AREDTGDLPD SDLWWNSVGT PPSSSSVDRQ  480
DATFPSHEGT YKSELDIASS ITDSASHYWQ TPDCLPSSSP PVADNPEKPP GKLSARINSL  540
LPPILPASAA ELPSFSNTYV TASDTHVTAL TITCSCSENG AKTVQAVMMN IAGGKVHQEM  600
MSGTWKPCTE DCKQQSCVQC SQRRKSQRPV AKGSKSGFVF VFLLGVVSTV IWFLLLRSSW  660
RMARFMHDLI L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	5	160	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	5	160	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	5	160	20	174	NAC domain-containing protein 19
3swm_B	1e-41	5	160	20	174	NAC domain-containing protein 19
3swm_C	1e-41	5	160	20	174	NAC domain-containing protein 19
3swm_D	1e-41	5	160	20	174	NAC domain-containing protein 19
3swp_A	1e-41	5	160	20	174	NAC domain-containing protein 19
3swp_B	1e-41	5	160	20	174	NAC domain-containing protein 19
3swp_C	1e-41	5	160	20	174	NAC domain-containing protein 19
3swp_D	1e-41	5	160	20	174	NAC domain-containing protein 19
4dul_A	1e-41	5	160	17	171	NAC domain-containing protein 19
4dul_B	1e-41	5	160	17	171	NAC domain-containing protein 19

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.15974	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363310.1	0.0	NAC domain-containing protein 91-like
TrEMBL	A0A2K1IG12	0.0	A0A2K1IG12_PHYPA; Uncharacterized protein
STRING	PP1S73_182V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	2e-67	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Pp3c24_8270V3.2.p