PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_8050V3.1.p
Common NamePHYPADRAFT_211784
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 312aa    MW: 34445.1 Da    PI: 6.5666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_8050V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10251296346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                         WT+ Ed  lv a k ++++   +W++Ia  ++ gR+  qc  r+  
  Pp3c24_8050V3.1.p 251 VWTETEDRVLVSALKTFPKDtlkRWDKIADAVP-GRSKAQCFKRFSE 296
                        7********************************.*******999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.112154197IPR017877Myb-like domain
SMARTSM007170.16154207IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-5156205IPR009057Homeodomain-like
SMARTSM007171.1E-9248300IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-12249297IPR009057Homeodomain-like
PfamPF002494.6E-9250295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-8252295IPR009057Homeodomain-like
CDDcd001679.32E-9252294No hitNo description
PROSITE profilePS500908.223252298IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDFDIIDDVK PRFQLQSGPL DSTVEEKELN IVHIGVCSSA GVLFLALSWF QTGVLQFLSL  60
WLALSLVIGP FAPVSLTGGN CRVGVGELLP EPEPLEESPR EPEKRPKGFN KKSDALVGRI  120
SSRENLMSSP SLVSTSYANG TAVNVVPQQL KSGKDKEWTG EDIELLRKQL LKFPRGTLQR  180
WDVISEVFAG SHSTEDVIKT AKLLGEKKFT DGDSYAKFLA QRKGGEKVID SPLSQRWEGG  240
QADVTNGTTS VWTETEDRVL VSALKTFPKD TLKRWDKIAD AVPGRSKAQC FKRFSELRDS  300
FRSSRVDQAL E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.19790.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364469.10.0transcription factor MAMYB-like
RefseqXP_024364470.10.0transcription factor MAMYB-like
TrEMBLA9SFB80.0A9SFB8_PHYPA; Predicted protein
STRINGPP1S73_153V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-54MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]