PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Basic Information? help Back to Top

TF ID

Pp3c24_6560V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 288aa MW: 32102.9 Da PI: 6.9186

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_6560V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.3	4.7e-42	11	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+fanvhklFG+sn+l++lk +++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk+ Pp3c24_6560V3.5.p 11 ACAACKFQRRKCSADCPLSPYFPPDQPKRFANVHKLFGVSNILRILKFVDPSKREDTVKSIAYEADTREKDPVHGCLGVITVLQNQVSKLKE 102 7***************************************************************************************** PP DUF260 93 elallkeel 101 el++++e+l Pp3c24_6560V3.5.p 103 ELNMAGEQL 111 *999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.973	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-40	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MTGSTGNTNT ACAACKFQRR KCSADCPLSP YFPPDQPKRF ANVHKLFGVS NILRILKFVD 60 PSKREDTVKS IAYEADTREK DPVHGCLGVI TVLQNQVSKL KEELNMAGEQ LFLVEQQQAV 120 ASAGQQLQSF HGHPGLSRSS VSEDEESQFL RHQISFHDDH KFDTKFNQKS NILPLNYRYG 180 ADDASSVISL LNVDHVEQLR RAGSYFGMDP SYDESPVSHH QMHMQAVLEQ DHFHALRSSP 240 PDGLSAYGIA PEGVMRRTNY LVTSGQCKVS DHDLQRAGVY LTLTNQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-38	4	112	4	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-38	4	112	4	112	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363798.1	0.0	uncharacterized protein LOC112276598 isoform X1
Refseq	XP_024363799.1	0.0	uncharacterized protein LOC112276598 isoform X1
Refseq	XP_024363800.1	0.0	uncharacterized protein LOC112276598 isoform X2
Refseq	XP_024363801.1	0.0	uncharacterized protein LOC112276598 isoform X2
Refseq	XP_024363802.1	0.0	uncharacterized protein LOC112276598 isoform X2
Refseq	XP_024363803.1	0.0	uncharacterized protein LOC112276598 isoform X2
TrEMBL	A0A2K1IFT1	0.0	A0A2K1IFT1_PHYPA; Uncharacterized protein
STRING	PP1S73_7V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-42	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Pp3c24_6560V3.5.p