PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c24_6560V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 288aa MW: 32102.9 Da PI: 6.9186 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.3 | 4.7e-42 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+fanvhklFG+sn+l++lk +++++red+++s++yeA+ r +dPv+G++gvi+ lq+q+++lk+ Pp3c24_6560V3.2.p 11 ACAACKFQRRKCSADCPLSPYFPPDQPKRFANVHKLFGVSNILRILKFVDPSKREDTVKSIAYEADTREKDPVHGCLGVITVLQNQVSKLKE 102 7******************************************************************************************* PP DUF260 93 elallkeel 101 el++++e+l Pp3c24_6560V3.2.p 103 ELNMAGEQL 111 ***999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.973 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-40 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MTGSTGNTNT ACAACKFQRR KCSADCPLSP YFPPDQPKRF ANVHKLFGVS NILRILKFVD 60 PSKREDTVKS IAYEADTREK DPVHGCLGVI TVLQNQVSKL KEELNMAGEQ LFLVEQQQAV 120 ASAGQQLQSF HGHPGLSRSS VSEDEESQFL RHQISFHDDH KFDTKFNQKS NILPLNYRYG 180 ADDASSVISL LNVDHVEQLR RAGSYFGMDP SYDESPVSHH QMHMQAVLEQ DHFHALRSSP 240 PDGLSAYGIA PEGVMRRTNY LVTSGQCKVS DHDLQRAGVY LTLTNQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 4 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 4 | 112 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024363798.1 | 0.0 | uncharacterized protein LOC112276598 isoform X1 | ||||
Refseq | XP_024363799.1 | 0.0 | uncharacterized protein LOC112276598 isoform X1 | ||||
Refseq | XP_024363800.1 | 0.0 | uncharacterized protein LOC112276598 isoform X2 | ||||
Refseq | XP_024363801.1 | 0.0 | uncharacterized protein LOC112276598 isoform X2 | ||||
Refseq | XP_024363802.1 | 0.0 | uncharacterized protein LOC112276598 isoform X2 | ||||
Refseq | XP_024363803.1 | 0.0 | uncharacterized protein LOC112276598 isoform X2 | ||||
TrEMBL | A0A2K1IFT1 | 0.0 | A0A2K1IFT1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S73_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-42 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c24_6560V3.2.p |