PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Plant Ontology |

Publication

Basic Information? help Back to Top

TF ID

Pp3c24_6460V3.5.p

Common Name

PHYPADRAFT_99342

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 540aa MW: 58486 Da PI: 4.9718

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_6460V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.8	2.4e-24	454	495	11	52
RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+ Pp3c24_6460V3.5.p 454 AQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 495 699*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	428	515	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-22	454	495	IPR003035	RWP-RK domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MASGLLESST CEEVVLDASN SPRFDINEFL KPPKDFNTDE QFFNFSAFNI PAPTGNMLTP 60 LPPLNIRRSG RSDGGPEPDC NALFFDGKEV DGDAAYAEDT LNEELIAFDE TATDIAKDPF 120 AHFNVSLDSY INNPPISPVS LEVPTPVCSL ERVVPSMTCP STICTTGFYM VGDTGGLVDM 180 EDRAFVSVEY GASTSGGAHS MNFSGTPLNW DMVREGSIQP NAGKSQNQQF QCASCQILRR 240 IVHSNGGFYV VPSMANVRLT DHDEIVESTL LDIAAFDILQ LVLRLVGVAC CMRIQDTKLE 300 IHGCDGQSYH AVLQTRFCID DGFPASFEQQ MVEFLVANAE YVKHFLLQYS LLRRKEGFVL 360 QHDSLASHGS GGVGMGMSSE RVMGANGRCI SKQIGHIAPP EVLCNSSAYS SSGCTYGKAG 420 LKQDKFHGSG SIDSSDNADA SVGLVKPQKS NAAAQHFHLP INAAAKELGI CPTVLKKICR 480 RNGMRRWPHR KIKSIERIIA TLEQTIAEGS GQGDEGIRLE IAMLRNERAQ LCAGFSGDI*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MASGLLESST CEEVVLDASN SPRFDINEFL KPPKDFNTDE QFFNFSAFNI PAPTGNMLTP  60
LPPLNIRRSG RSDGGPEPDC NALFFDGKEV DGDAAYAEDT LNEELIAFDE TATDIAKDPF  120
AHFNVSLDSY INNPPISPVS LEVPTPVCSL ERVVPSMTCP STICTTGFYM VGDTGGLVDM  180
EDRAFVSVEY GASTSGGAHS MNFSGTPLNW DMVREGSIQP NAGKSQNQQF QCASCQILRR  240
IVHSNGGFYV VPSMANVRLT DHDEIVESTL LDIAAFDILQ LVLRLVGVAC CMRIQDTKLE  300
IHGCDGQSYH AVLQTRFCID DGFPASFEQQ MVEFLVANAE YVKHFLLQYS LLRRKEGFVL  360
QHDSLASHGS GGVGMGMSSE RVMGANGRCI SKQIGHIAPP EVLCNSSAYS SSGCTYGKAG  420
LKQDKFHGSG SIDSSDNADA SVGLVKPQKS NAAAQHFHLP INAAAKELGI CPTVLKKICR  480
RNGMRRWPHR KIKSIERIIA TLEQTIAEGS GQGDEGIRLE IAMLRNERAQ LCAGFSGDI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363597.1	0.0	uncharacterized protein LOC112276464 isoform X2
TrEMBL	A9TZJ1	0.0	A9TZJ1_PHYPA; Predicted protein
STRING	PP1S387_8V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c24_6460V3.5.p
Entrez Gene	5947230

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]