PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c24_5330V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 458aa    MW: 51423 Da    PI: 7.1896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c24_5330V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05297321223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        +C+   C+ksF+++ +L+rH    H
  Pp3c24_5330V3.1.p 297 VCKiaGCNKSFKSSKTLRRHVLQkH 321
                        79999***************87666 PP
2zf-C2H213.40.00023369390223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp C   F r+++++rH r +
  Pp3c24_5330V3.1.p 369 SCPFCQSKFARQHEMERHRRIC 390
                        7*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.9E-4296321IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432296326IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-5297318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280298321IPR007087Zinc finger, C2H2
SMARTSM0035530368388IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MICESRGQLE RVCLSANSMF YNVADSAFPM LTLQSSGQIS PSLPAASGMA QDFQQFGPLD  60
GGLVSQVDLS NYAMKPRVLC FGIQSEVAKE LSFVLNKNGM STAGSKLAAE TSVEGGMVVV  120
RSQLCPWSSM NINNTNRIAV TDPLSFQGML EVALSSDARR PARHEGWCKY CATLEKELTN  180
SLEVKEKWAD ENSWEDVKFK QADQYFESRM NMSIAEQDSR KRKYGLDDWE NDRAFVLLKL  240
NELNTRATRA EQRVLELEQL LRDHALGSLD ETCDDSDIVT SASQHDCFNE EQSEMLVCKI  300
AGCNKSFKSS KTLRRHVLQK HSDNARFLVC NQPTVNGLMC RFETIHSGVL SYHRKHSLAH  360
QRREDWHISC PFCQSKFARQ HEMERHRRIC KSRPAPRASP SHGSVQSTVT GNLSEPRPGL  420
NAHPLQMSSY VLLPDRGTHS HQLFSMPDSN IESSISY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364054.10.0uncharacterized protein LOC112276709 isoform X1
TrEMBLA0A2K1IFL50.0A0A2K1IFL5_PHYPA; Uncharacterized protein
STRINGPP1S10_187V6.10.0(Physcomitrella patens)