PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pp3c24_17130V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 944aa MW: 105422 Da PI: 8.1221

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c24_17130V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.9	3.5e-11	270	318	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r+ W++eE++ l+++ +++G+g+Wk I + + ++Rt q+k++++ Pp3c24_17130V3.1.p 270 RQQWSPEEEDGLKRGLQKYGPGSWKEIKEQEPvlLNRTMPQIKEKYRVM 318 899*******************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.979	265	323	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-12	266	318	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.43E-11	269	320	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-7	269	321	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-9	270	317	IPR001005	SANT/Myb domain
CDD	cd11660	8.46E-15	271	319	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MLLTLTEEEK TIDPTLGYPA GYAKLCHHAL TQPQGVLTPF TEGPPQRFVP YAPSSEELLL 60 IKEWDAIFPI IPDIDEEAPN AHEFAEEIWE QLDHLGDAGF DPAKFRVDAY GNVLYWSADP 120 SSPLSWEVDH WFPHLRGGRT VPSNLQIVQW QARQRKKNRL EFLVPWWDLQ HGVSISQFLS 180 TFASKNVEFR RRSFALFFAD GEDEKVFRYH LGDSRSWSPQ HRGKMSSCSM AGGGVSSMGK 240 VKLATSKVSS STRSAMSANL GGSLTESSNR QQWSPEEEDG LKRGLQKYGP GSWKEIKEQE 300 PVLLNRTMPQ IKEKYRVMRD FGKENIASTS VVTGRNDHDN HSDVSNTMQK ELRLKKMREE 360 GKREKEKEVA RLEETVRTLK AQNEKERLAI LELEGNLSKH KQKVEKQRRW AETQSSYRLC 420 LERMIRNAMH QSISYKEQAC QNQAACNALM ARLDCQDMTC EASEKILQRH SPREALAALG 480 IPGSSGSGQR KPSQGQEIVD VNSRLFLVSK NDGQVVAPCR GLQRYTSGLD TEDEIEEGNS 540 PRRNGFSIQS SFLDVAALQH GSPSTSKGKK KLPREGAKRK AISIGATHAQ PTKQAVHRQH 600 FEKGLEGNGP MRSKLMDEKE GSKLPDSQQE ICQVEPHGVQ GDSSRVMEEL IQEVIIAQHD 660 KIQNVEAAAL ESVKSNDQRL KKAGKSNIDR WLHVLLDEAF PRISPDLAAQ SSECQTNGQP 720 PLSPDLSALS MAAIRGSVEL EEGRGSPKLL KNGCAEDLKG RLSEIMRKLS VGNTGEESGV 780 DLSRGPNNRL GLRNTSTSFE GFKLSDSSLH EHLQSESVCD ITSSIPESVR NWPEGGIKPR 840 GGADWYRDSS SNKVKTSYSK SVKDEPTLSH CLILHKKSVS EDMEGIDWER LSSGNSRALV 900 DNKAGLHHRH GLRATIKACS LKWRRAAKRL DKPLQEGSIP LQE*

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MLLTLTEEEK TIDPTLGYPA GYAKLCHHAL TQPQGVLTPF TEGPPQRFVP YAPSSEELLL  60
IKEWDAIFPI IPDIDEEAPN AHEFAEEIWE QLDHLGDAGF DPAKFRVDAY GNVLYWSADP  120
SSPLSWEVDH WFPHLRGGRT VPSNLQIVQW QARQRKKNRL EFLVPWWDLQ HGVSISQFLS  180
TFASKNVEFR RRSFALFFAD GEDEKVFRYH LGDSRSWSPQ HRGKMSSCSM AGGGVSSMGK  240
VKLATSKVSS STRSAMSANL GGSLTESSNR QQWSPEEEDG LKRGLQKYGP GSWKEIKEQE  300
PVLLNRTMPQ IKEKYRVMRD FGKENIASTS VVTGRNDHDN HSDVSNTMQK ELRLKKMREE  360
GKREKEKEVA RLEETVRTLK AQNEKERLAI LELEGNLSKH KQKVEKQRRW AETQSSYRLC  420
LERMIRNAMH QSISYKEQAC QNQAACNALM ARLDCQDMTC EASEKILQRH SPREALAALG  480
IPGSSGSGQR KPSQGQEIVD VNSRLFLVSK NDGQVVAPCR GLQRYTSGLD TEDEIEEGNS  540
PRRNGFSIQS SFLDVAALQH GSPSTSKGKK KLPREGAKRK AISIGATHAQ PTKQAVHRQH  600
FEKGLEGNGP MRSKLMDEKE GSKLPDSQQE ICQVEPHGVQ GDSSRVMEEL IQEVIIAQHD  660
KIQNVEAAAL ESVKSNDQRL KKAGKSNIDR WLHVLLDEAF PRISPDLAAQ SSECQTNGQP  720
PLSPDLSALS MAAIRGSVEL EEGRGSPKLL KNGCAEDLKG RLSEIMRKLS VGNTGEESGV  780
DLSRGPNNRL GLRNTSTSFE GFKLSDSSLH EHLQSESVCD ITSSIPESVR NWPEGGIKPR  840
GGADWYRDSS SNKVKTSYSK SVKDEPTLSH CLILHKKSVS EDMEGIDWER LSSGNSRALV  900
DNKAGLHHRH GLRATIKACS LKWRRAAKRL DKPLQEGSIP LQE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363547.1	0.0	uncharacterized protein LOC112276449 isoform X1
TrEMBL	A0A2K1IH49	0.0	A0A2K1IH49_PHYPA; Uncharacterized protein
STRING	PP1S260_3V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Link Out ? help Back to Top
Phytozome	Pp3c24_17130V3.1.p