PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_9520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 711aa    MW: 78875.9 Da    PI: 4.6637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_9520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.2e-4861321128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppG+rF+P+d elv ++Lk+k++g+++++ + i  vd+yk+ePwdLp ++v++ +++ewyf+  rdkky++g+r+nrat+ gyWk+tgkd+
  Pp3c23_9520V3.1.p   6 LPPGYRFSPSDVELVAHFLKRKINGERFDV-NPIVVVDLYKMEPWDLPvRSVNGsNDREWYFYNARDKKYPSGSRTNRATELGYWKSTGKDR 96 
                        79****************************.88***************6444443677********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +  + + g+kktLv+y+grap+ge+tdWvmheyr+
  Pp3c23_9520V3.1.p  97 CIRC--KYANGMKKTLVYYTGRAPNGERTDWVMHEYRM 132
                        **99..6789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-523155IPR003441NAC domain
PROSITE profilePS5100552.6356155IPR003441NAC domain
PfamPF023651.7E-247132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MIVTDLPPGY RFSPSDVELV AHFLKRKING ERFDVNPIVV VDLYKMEPWD LPVRSVNGSN  60
DREWYFYNAR DKKYPSGSRT NRATELGYWK STGKDRCIRC KYANGMKKTL VYYTGRAPNG  120
ERTDWVMHEY RMEDKFYESL KERQEPYVLA RVFHKSGLGP NNGAQYGAPF IEEPCSPSHE  180
EPCTSTHEQV QPSSIDLEPE PAVMIKPEAL PTQTSSRDDF FSEVGRAKLL YGTPGHMSCG  240
DGQSFFPEML GTSQASFEDL LSEEDLKSLL QPMYDTGAES WKEFPIDQNL YGNPGPMSYE  300
DGQFCFPEMV NTNSANFADL FTEEDLRLLQ QPTYDVGGES WKESIIDQNL MSGENVVGDF  360
DYANDLKVGI LPPDSVEGTG IDKSLMIPCG GVFDPGDTGI QLIPRKGFSA MAQLDSQGDV  420
ARRIRLVRRE APGNKSMDIF KSVSTSNGVS KIFHTSESSG DSMTFVSEHY SKDKSPDLDL  480
HRSSEELLMD FGQVDLASEG NCDVTDSSED IGTSIKGSPL SSISKEQPAL TQDEATPFQT  540
QPDMTFATHA PVNDRQRPKD VPTPSPQAAD CEQNPPEKPS RMHGLLPISP DSAVESPGFT  600
STYVKTSDSH LIALHVTCSS SENGSKRVQA VVMDYTEGRL HQGVLSGTWR PCTENCNQAD  660
CDQCSARSQP QRHITKRYGN GFVFVFLLGV VTASIWYFMM SGTSGMAPHV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-44515514168Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362675.10.0protein NTM1-like 9
TrEMBLA0A2K1IIN90.0A0A2K1IIN9_PHYPA; Uncharacterized protein
STRINGPP1S10_90V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-61NAC domain containing protein 2