PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_861V3.1.p
Common NamePHYPADRAFT_91435
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 454aa    MW: 48919 Da    PI: 7.0273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_861V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-053557123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k Fs +  L  H++tH
  Pp3c23_861V3.1.p 35 FECKYCHKQFSVPQALGGHMNTH 57
                      89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-63161No hitNo description
Gene3DG3DSA:3.30.160.601.2E-43260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613562IPR007087Zinc finger, C2H2
PfamPF139125.3E-73558IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEEAPEDDTA STRKRGPPDY GYVSDEDGVT SKPQFECKYC HKQFSVPQAL GGHMNTHRLE  60
RKEDEYEQAQ LLLNAHAHRH EMRLRSAGWQ IVDPTTAVRS SNTVLMTLPR LDAPRPLIPP  120
QFSYNEAWQP ISPTMRPMIP QPSPPHYHLA STTSRSNLHH LRWRAPGYNP NANVPGFVPL  180
DPSLQRGGMQ PEFRQGVLQP GQCGGSSAGP SLPLQIQCSQ RPAASPTSRD DSTHMQSRAT  240
LNLIPPSVSS IRRRARLVRT RSDALVIDPQ SVGRSSEGSF QPSQSAGAHP MEIGGASTSQ  300
PRDMGQPSSL PSHSFHDPSG PSSSSLPPSH EDDPADVRQH RLGKAPMTQR SLGSSASASE  360
SVRAGNQVVY HLNVQSDDAS NQLPMNQDVG ATQSSKGTGM QSATVPPKAT VIDDAIEGSE  420
SESITITTVE SGEVSGPSTS TNHQAAESSR RSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1IHR40.0A0A2K1IHR4_PHYPA; Uncharacterized protein
STRINGPP1S210_65V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP395527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]