PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_8430V3.2.p | ||||||||
Common Name | PHYPADRAFT_159199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 488aa MW: 55165.3 Da PI: 7.3632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 326 | 350 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 +C+ C+k+F+++ +L+rH H Pp3c23_8430V3.2.p 326 VCKiaGCNKTFKSSKTLRRHALQkH 350 79999***************87655 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 398 | 419 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C F r+++++rH r + Pp3c23_8430V3.2.p 398 SCPFCQSKFARQHEMERHRRIC 419 7*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.328 | 325 | 355 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 325 | 350 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 326 | 347 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 327 | 350 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.621 | 397 | 425 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 30 | 397 | 417 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 398 | 419 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MQAVLPYEIR PKGCVSEQFK MICESRAGLQ YACGQTSSMY YNVADSVPCK TTSFPMLSLH 60 NSAEQILPSL PVIHGNMAQD FQQIETMNRA AVLPQIEDPY NFLTQPASRG LSWCFGLQSD 120 VAKEWSYLVN KSGTHAAGSK VAAETCVEGG IVVVRSLSCP WSSTNVQDTY RSADSDLILF 180 HRILDDAFPS DCRQVGWCKY CATLEKELMS SLEVKVSKWA DDNSLVGANF KQMDQYFEPR 240 TTMPVVEHDS RKRKYEQNDW ESDRAQVLLK LNELNTRTKK AEQRVLELEQ LLRDPVVLGL 300 DDTCDDSDIV TSASQHGYFH ESEMLVCKIA GCNKTFKSSK TLRRHALQKH SDNARFLVCN 360 QPTVNGEMCH FETIHSGVLS YHRKHSLAHQ RREDWHISCP FCQSKFARQH EMERHRRICK 420 SRPQPSQASP NSNGSSVQST VTGTLSEASL NHPTQLPDYM VPTRRNYDHQ LFKMSGTKFN 480 IESGITL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.19388 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362399.1 | 0.0 | uncharacterized protein LOC112275896 | ||||
Refseq | XP_024362400.1 | 0.0 | uncharacterized protein LOC112275896 | ||||
TrEMBL | A0A2K1III8 | 0.0 | A0A2K1III8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_187V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_8430V3.2.p |
Entrez Gene | 5916854 |
Publications ? help Back to Top | |||
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