PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_8430V3.1.p
Common NamePHYPADRAFT_159199
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 488aa    MW: 55165.3 Da    PI: 7.3632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_8430V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05326350223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        +C+   C+k+F+++ +L+rH    H
  Pp3c23_8430V3.1.p 326 VCKiaGCNKTFKSSKTLRRHALQkH 350
                        79999***************87655 PP
2zf-C2H213.30.00025398419223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +Cp C   F r+++++rH r +
  Pp3c23_8430V3.1.p 398 SCPFCQSKFARQHEMERHRRIC 419
                        7*******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.328325355IPR007087Zinc finger, C2H2
SMARTSM003550.0012325350IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5326347IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280327350IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621397425IPR007087Zinc finger, C2H2
SMARTSM0035530397417IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4398419IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MQAVLPYEIR PKGCVSEQFK MICESRAGLQ YACGQTSSMY YNVADSVPCK TTSFPMLSLH  60
NSAEQILPSL PVIHGNMAQD FQQIETMNRA AVLPQIEDPY NFLTQPASRG LSWCFGLQSD  120
VAKEWSYLVN KSGTHAAGSK VAAETCVEGG IVVVRSLSCP WSSTNVQDTY RSADSDLILF  180
HRILDDAFPS DCRQVGWCKY CATLEKELMS SLEVKVSKWA DDNSLVGANF KQMDQYFEPR  240
TTMPVVEHDS RKRKYEQNDW ESDRAQVLLK LNELNTRTKK AEQRVLELEQ LLRDPVVLGL  300
DDTCDDSDIV TSASQHGYFH ESEMLVCKIA GCNKTFKSSK TLRRHALQKH SDNARFLVCN  360
QPTVNGEMCH FETIHSGVLS YHRKHSLAHQ RREDWHISCP FCQSKFARQH EMERHRRICK  420
SRPQPSQASP NSNGSSVQST VTGTLSEASL NHPTQLPDYM VPTRRNYDHQ LFKMSGTKFN  480
IESGITL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.193880.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362399.10.0uncharacterized protein LOC112275896
RefseqXP_024362400.10.0uncharacterized protein LOC112275896
TrEMBLA0A2K1III80.0A0A2K1III8_PHYPA; Uncharacterized protein
STRINGPP1S10_187V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]