PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_800V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 596aa    MW: 63220.6 Da    PI: 6.715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_800V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005579101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C+++F  +  L  H+++H
  Pp3c23_800V3.2.p  79 YECRFCNMRFAKSQALGGHMNRH 101
                       99********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.04E-576105No hitNo description
PROSITE profilePS5015710.74179106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0010094Biological Processspecification of carpel identity
GO:0010097Biological Processspecification of stamen identity
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MRMGGVAGDS SILVALPSKP NPRRPPPLSF PLSSAAGGEA DWEDALASPA EQSRPKMKQK  60
STDDGCTTDE EGDLSKTLYE CRFCNMRFAK SQALGGHMNR HRLEREKEQY QHAQQLVSSL  120
AQQQMPRTWN TMAAELNPSG TGAALARLSN QMTGAPRVDG SRPQLPPQIS FNSTRQPIST  180
TCSNSIPTSP SSNYYLPSNS SSKNLQHLQW KVDGFDSNGT IPRSGSQEGL NALDSTLQGD  240
GMRDDFLSGM LRPRQDGGSF VSSQFNNMNP MLSRGLGGPG SNSFHGSGPD MIQGGSGTTG  300
LQFCHSRTNS HQPQSRMNDV LRQLASTSTP LNSTLMQGSL PNDVKPPGAS FAAMRTSASA  360
PAYFMQGNNN VPQFNQQQMG RPSESLLQPF QTSINRPLGN ASTSQHHAMS RSSLFPSYSF  420
NNLGAPNFGS LAPSHDPNAL QGFENNFAGV GQNGSMSRPP LTQTSSGSSA SGSFGICGGH  480
EGMYGVKMQS DDAYNQLSVN QDMGASHISH GALMGSTVAA PMVASVVHEV VDGNHCESMN  540
TTTVESGDVS GLSAPARYQS TDFSSGSPEW KHLNSPSGQL EANISSPTSD DYCSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362086.10.0uncharacterized protein LOC112275716 isoform X1
RefseqXP_024362087.10.0uncharacterized protein LOC112275716 isoform X1
TrEMBLA0A2K1IHP60.0A0A2K1IHP6_PHYPA; Uncharacterized protein
STRINGPP1S210_60V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP395527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.14e-08C2H2 family protein