PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_7470V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 322aa MW: 35336.4 Da PI: 6.9946 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.8 | 1.6e-42 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC++dC+l+pyfp +qpk+f+nvhklFG+sn+l++lk++++++red+++s++yeA+ r +dPv+G++gv + lq+q+++lk Pp3c23_7470V3.2.p 13 ACAACKYQRRKCSPDCPLSPYFPPDQPKRFQNVHKLFGVSNILRILKHVDPSKREDTVKSIIYEADTREKDPVHGCLGVTTILQNQVSKLKD 104 7******************************************************************************************* PP DUF260 93 elallkee 100 ela+++e+ Pp3c23_7470V3.2.p 105 ELAVAREQ 112 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.03 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-41 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSGSSGSSGT NAACAACKYQ RRKCSPDCPL SPYFPPDQPK RFQNVHKLFG VSNILRILKH 60 VDPSKREDTV KSIIYEADTR EKDPVHGCLG VTTILQNQVS KLKDELAVAR EQMYLLQQQH 120 TFNQQARMEQ IVGSLGASSS VVDVSSGQEA NVLMHHSQQY SDMNQLNSDF TKSNPLSVSS 180 FEPDQYLRND GFDQIKLSSA STSTFDVSRY IRGESLVQQS ALLGQVKLDE GSVQYRAPIY 240 GMADVGSSFI STPSDDNLTQ HVDCAFNTPD PYAMAIRRRG SGFLNLTATS EAELKRSTGS 300 HGGVPEHELR RAGVYLTLTN N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 7 | 113 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 7 | 113 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362031.1 | 0.0 | protein IAL1-like | ||||
TrEMBL | A0A2K1IID1 | 0.0 | A0A2K1IID1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S10_271V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-38 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_7470V3.2.p |