PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Pp3c23_3520V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 341aa MW: 38904.5 Da PI: 8.1305

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_3520V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.4	5.5e-12	2	25	32	55
G2-like 32 ilelmkvkgLtlehvkSHLQkYRl 55 +l+lm+vkgLt++hvkSHLQ+YR+ Pp3c23_3520V3.5.p 2 VLQLMDVKGLTIAHVKSHLQMYRS 25 89*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-11	2	27	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MVLQLMDVKG LTIAHVKSHL QMYRSMKNDE SVQSDIGYWR EGHLHPTNLW LQATPERSRI 60 SDVLIHEQTA EIPMRSSSVK KQLETEWEMR RREYDARITF TMLMEGRVEY PAIITPTTRV 120 ESRSSTQLLK LLDGSGDSGP GRRRPSDVWT PFSELDFKNQ QDDAHRNPFP SFASRRLDIT 180 SRYTNDPLKF QGCEIHKQQS DLTRPQTQRP TVQDSFDRYS YDHNSECNWR QNRYSTDPNS 240 SLSLSRPHSW PGCTVPSQKG IILSHRSTAM ATKPVPIVDF LSSPQSRNIG RKGAPGDGLR 300 LHLTMSTGSG SEGHDEGPES LYRKKEEDVD LTLDLTMSTR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361958.1	0.0	uncharacterized protein LOC112275647
Refseq	XP_024361959.1	0.0	uncharacterized protein LOC112275647
TrEMBL	A0A2K1II05	0.0	A0A2K1II05_PHYPA; Uncharacterized protein
STRING	PP1S82_168V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-11	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c23_3520V3.5.p