PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_3290V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 417aa    MW: 45842.8 Da    PI: 8.7572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_3290V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09192238455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h +rEr+RRd++  ++  L +llP+a      K + a ++e A+ ++ksLq
  Pp3c23_3290V3.6.p 192 EHIIRERQRRDDMAAKYLILESLLPPA-----AKRERAVVVEDAISFVKSLQ 238
                        699***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.252188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10191256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7191255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6192238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-7193241No hitNo description
SMARTSM003539.8E-6194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLWMRYALTC LRSNTYQTNI PGMDIELDDI LHWQMPLCTL LADIEIPEGN IDGMLSIELP  60
EISDPVAVET ASSLPNSLSA SDKRTSSPLW PCDLPPSVSN SKDIHLAAHP PANLFASNCA  120
LVGSSQSSSA PLAGVNSLTG SHEVEPVTPP AAKRKRTRGS RASTKRSTKV KPKPEAVVVE  180
LSKEARLPTQ AEHIIRERQR RDDMAAKYLI LESLLPPAAK RERAVVVEDA ISFVKSLQHK  240
RTELLKRRVK LKVAAQHQSC NGQSISCCQN KKLMVSREPP GFLTASCVKK SAENRRTDSP  300
ISSSIKVQDI MIKPNSSTAG DLNTTVKPLQ IQVHFSEEEV VVEMVCSHQR PNFQSFVLQA  360
VESFGLDVTR YSIQRLTHGV VHCIITCNKS QLPWLALEIQ TSASLIGDLR RVLMHG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361886.10.0uncharacterized protein LOC112275612
RefseqXP_024361887.10.0uncharacterized protein LOC112275612
RefseqXP_024361888.10.0uncharacterized protein LOC112275612
RefseqXP_024361889.10.0uncharacterized protein LOC112275612
TrEMBLA0A2K1IHZ50.0A0A2K1IHZ5_PHYPA; Uncharacterized protein
STRINGPP1S94_148V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.13e-07bHLH family protein