PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c23_3290V3.3.p

Common Name

PHYPADRAFT_229808

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 395aa MW: 43227.7 Da PI: 8.5724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_3290V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	170	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr+RRd++ ++ L +llP+a K + a ++e A+ ++ksLq Pp3c23_3290V3.3.p 170 EHIIRERQRRDDMAAKYLILESLLPPA-----AKRERAVVVEDAISFVKSLQ 216 699*********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.252	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	169	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-10	169	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	170	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.66E-7	171	219	No hit	No description
SMART	SM00353	9.8E-6	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MDIELDDILH WQMPLCTLLA DIEIPEGNID GMLSIELPEI SDPVAVETAS SLPNSLSASD 60 KRTSSPLWPC DLPPSVSNSK DIHLAAHPPA NLFASNCALV GSSQSSSAPL AGVNSLTGSH 120 EVEPVTPPAA KRKRTRGSRA STKRSTKVKP KPEAVVVELS KEARLPTQAE HIIRERQRRD 180 DMAAKYLILE SLLPPAAKRE RAVVVEDAIS FVKSLQHKRT ELLKRRVKLK VAAQHQSCNG 240 QSISCCQNKK LMVSREPPGF LTASCVKKSA ENRRTDSPIS SSIKVQDIMI KPNSSTAGDL 300 NTTVKPLQIQ VHFSEEEVVV EMVCSHQRPN FQSFVLQAVE SFGLDVTRYS IQRLTHGVVH 360 CIITCNKSQL PWLALEIQTS ASLIGDLRRV LMHG*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MDIELDDILH WQMPLCTLLA DIEIPEGNID GMLSIELPEI SDPVAVETAS SLPNSLSASD  60
KRTSSPLWPC DLPPSVSNSK DIHLAAHPPA NLFASNCALV GSSQSSSAPL AGVNSLTGSH  120
EVEPVTPPAA KRKRTRGSRA STKRSTKVKP KPEAVVVELS KEARLPTQAE HIIRERQRRD  180
DMAAKYLILE SLLPPAAKRE RAVVVEDAIS FVKSLQHKRT ELLKRRVKLK VAAQHQSCNG  240
QSISCCQNKK LMVSREPPGF LTASCVKKSA ENRRTDSPIS SSIKVQDIMI KPNSSTAGDL  300
NTTVKPLQIQ VHFSEEEVVV EMVCSHQRPN FQSFVLQAVE SFGLDVTRYS IQRLTHGVVH  360
CIITCNKSQL PWLALEIQTS ASLIGDLRRV LMHG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361886.1	0.0	uncharacterized protein LOC112275612
Refseq	XP_024361887.1	0.0	uncharacterized protein LOC112275612
Refseq	XP_024361888.1	0.0	uncharacterized protein LOC112275612
Refseq	XP_024361889.1	0.0	uncharacterized protein LOC112275612
TrEMBL	A0A2K1IHZ5	0.0	A0A2K1IHZ5_PHYPA; Uncharacterized protein
STRING	PP1S94_148V6.1	1e-165	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	3e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c23_3290V3.3.p
Entrez Gene	5929404

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]