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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_3290V3.2.p | ||||||||
Common Name | PHYPADRAFT_229808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 43227.7 Da PI: 8.5724 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 170 | 216 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr+RRd++ ++ L +llP+a K + a ++e A+ ++ksLq Pp3c23_3290V3.2.p 170 EHIIRERQRRDDMAAKYLILESLLPPA-----AKRERAVVVEDAISFVKSLQ 216 699***********************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.252 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 169 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-10 | 169 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 170 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.66E-7 | 171 | 219 | No hit | No description |
SMART | SM00353 | 9.8E-6 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDIELDDILH WQMPLCTLLA DIEIPEGNID GMLSIELPEI SDPVAVETAS SLPNSLSASD 60 KRTSSPLWPC DLPPSVSNSK DIHLAAHPPA NLFASNCALV GSSQSSSAPL AGVNSLTGSH 120 EVEPVTPPAA KRKRTRGSRA STKRSTKVKP KPEAVVVELS KEARLPTQAE HIIRERQRRD 180 DMAAKYLILE SLLPPAAKRE RAVVVEDAIS FVKSLQHKRT ELLKRRVKLK VAAQHQSCNG 240 QSISCCQNKK LMVSREPPGF LTASCVKKSA ENRRTDSPIS SSIKVQDIMI KPNSSTAGDL 300 NTTVKPLQIQ VHFSEEEVVV EMVCSHQRPN FQSFVLQAVE SFGLDVTRYS IQRLTHGVVH 360 CIITCNKSQL PWLALEIQTS ASLIGDLRRV LMHG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361886.1 | 0.0 | uncharacterized protein LOC112275612 | ||||
Refseq | XP_024361887.1 | 0.0 | uncharacterized protein LOC112275612 | ||||
Refseq | XP_024361888.1 | 0.0 | uncharacterized protein LOC112275612 | ||||
Refseq | XP_024361889.1 | 0.0 | uncharacterized protein LOC112275612 | ||||
TrEMBL | A0A2K1IHZ5 | 0.0 | A0A2K1IHZ5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S94_148V6.1 | 1e-165 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22770.1 | 3e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_3290V3.2.p |
Entrez Gene | 5929404 |
Publications ? help Back to Top | |||
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