PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c23_2190V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 263aa    MW: 29338.7 Da    PI: 6.0327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c23_2190V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000186789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C  C++ F+ +  L  H+++H
  Pp3c23_2190V3.2.p 67 FECRFCDMKFPKSQALGGHMNRH 89
                       89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.61E-56495No hitNo description
PROSITE profilePS5015710.2016794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048440Biological Processcarpel development
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEHGGILWCL LLTIMMLNNN NRDSQDTTTS TSSIPAQTQA VDLSSGDGDE DNPNKRRKPK  60
EDSENKFECR FCDMKFPKSQ ALGGHMNRHR VEREHEEIQK ARNLLIAQHH APPYYAAAQY  120
YSRMDGASTS VDATGNFPST AGSFMTPQLP FYQPQAQSSV QNWPGNQLPP LQPNLDSAQT  180
NLQGTNYLNP TDNTRAYQSL PMLQREILMH GLQHPQHARA EMEALEGAKG VAKFEKMKGA  240
LLPQEEYADD VARSLATFLS EM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024362197.10.0zinc finger protein JAGGED-like
TrEMBLA0A2K1IHV80.0A0A2K1IHV8_PHYPA; Uncharacterized protein
STRINGPP1S82_59V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.19e-09C2H2 family protein