PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_2190V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 29338.7 Da PI: 6.0327 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ F+ + L H+++H Pp3c23_2190V3.1.p 67 FECRFCDMKFPKSQALGGHMNRH 89 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.61E-5 | 64 | 95 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEHGGILWCL LLTIMMLNNN NRDSQDTTTS TSSIPAQTQA VDLSSGDGDE DNPNKRRKPK 60 EDSENKFECR FCDMKFPKSQ ALGGHMNRHR VEREHEEIQK ARNLLIAQHH APPYYAAAQY 120 YSRMDGASTS VDATGNFPST AGSFMTPQLP FYQPQAQSSV QNWPGNQLPP LQPNLDSAQT 180 NLQGTNYLNP TDNTRAYQSL PMLQREILMH GLQHPQHARA EMEALEGAKG VAKFEKMKGA 240 LLPQEEYADD VARSLATFLS EM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362197.1 | 0.0 | zinc finger protein JAGGED-like | ||||
TrEMBL | A0A2K1IHV8 | 0.0 | A0A2K1IHV8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S82_59V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3955 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 9e-09 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_2190V3.1.p |