PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pp3c23_18290V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 1110aa MW: 124589 Da PI: 5.4412

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c23_18290V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	276	320	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 +WT+eE+e +++v+++G g+Wk I + ++R++ q+k++++ Pp3c23_18290V3.4.p 276 NWTAEEEEAVKRGVNKFGHGSWKEIKENDSalTNRSAMQLKEKYR 320 8***********************9999999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.5E-7	273	325	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.99E-11	275	324	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.317	276	323	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	276	320	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	276	320	IPR001005	SANT/Myb domain
CDD	cd11660	2.61E-15	277	323	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence Send to blast
MTFLAEGDTE VDPQLGYPHA YPKLCRHAYS TGLPMPFTQG PPQRFVPFSP QPEDFQLLKD 60 WDSVFPVVAE SERDSSNAQK FAEELWRQLD HLGNAGFDPE KFRVDPYGNV VHWNADPSSP 120 LAWDIDHWFP QSRGGKTELP NLRIVQWQAY ARKRNRLEFL VPWWDLQHGC SINQFLSAFA 180 AKNADFRKRS FALFFSGGED ELVAREHVGE CRPWPQQFRE KKALCGLAAA GIVTVSKTDS 240 GGEGRASVGS ATAPTSVEVS QILGSYPYGA ILGSPNWTAE EEEAVKRGVN KFGHGSWKEI 300 KENDSALTNR SAMQLKEKYR FMRAVSRNLV RENSESGQTD ISGRQSAATT ALQKELRVKI 360 MKEEEKRERE DELAQLEGTV VKLKLESEKE RIKAQELEAL LKKHKHRLEK QRKLAESQTS 420 YRLCLERVLR DTMHQTLSYK EQARLTREAC NVLIARIDSE KASCEAMEGK LLQQHSRREQ 480 LEATAVQGNV NGCTTTDQKK QVTRGRDIVD VTSCIFLRAA DEEDDEEEEK LIMNANQLSE 540 SDTNDEGDEI YNFRRDHQQA AARKSLVTHA IKAVLMQVED TKEAVEVLPR NSPPKLEAEP 600 SCPKYFRESR KGAVEMREML KPHQWYKADN ETLESESDCD FADDEMSPAI RLSTDAAWKD 660 DENLLRELSQ FHGGPISELR DYCAQNSNLR VNDLNMADRD AFERGRPPLS EPAIDIPVPS 720 TRESRSDSKR EVPKDVIMVQ TERSKANADT AASCEQKYVD KLYKPTRFRT PTSELTGEAI 780 AGDPPSESKG HLDELLEQIL DTHMDNVRQN DAKQHQSNDI DEEKLKEIGK SNLDKWLQVL 840 LFKDAESPCS SPGRGTPLQA TSPALSSMSV AVMRESLERA RQQELMSRDD ENVEGPKSLW 900 GALLRKMSAK QQLEYESAVF EPKEDYDIVD EARSSDAVKP LPKISPTTDL ATKQKPVSGA 960 LTEGRGSGCD SDCALPGRSG GNQLDSIVSN LRPKDANIGS ANEPNPLAND SSVSRKTDRR 1020 VEDGVLETQP SSFEKRHSPR PLSDVEETSE TESTDNLNQR SKVPTPEIKH PHGSKIRSIK 1080 VAAFVGWKKS SKSKPMIKSS HVDEVAQLA*

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence Send to blast

MTFLAEGDTE VDPQLGYPHA YPKLCRHAYS TGLPMPFTQG PPQRFVPFSP QPEDFQLLKD  60
WDSVFPVVAE SERDSSNAQK FAEELWRQLD HLGNAGFDPE KFRVDPYGNV VHWNADPSSP  120
LAWDIDHWFP QSRGGKTELP NLRIVQWQAY ARKRNRLEFL VPWWDLQHGC SINQFLSAFA  180
AKNADFRKRS FALFFSGGED ELVAREHVGE CRPWPQQFRE KKALCGLAAA GIVTVSKTDS  240
GGEGRASVGS ATAPTSVEVS QILGSYPYGA ILGSPNWTAE EEEAVKRGVN KFGHGSWKEI  300
KENDSALTNR SAMQLKEKYR FMRAVSRNLV RENSESGQTD ISGRQSAATT ALQKELRVKI  360
MKEEEKRERE DELAQLEGTV VKLKLESEKE RIKAQELEAL LKKHKHRLEK QRKLAESQTS  420
YRLCLERVLR DTMHQTLSYK EQARLTREAC NVLIARIDSE KASCEAMEGK LLQQHSRREQ  480
LEATAVQGNV NGCTTTDQKK QVTRGRDIVD VTSCIFLRAA DEEDDEEEEK LIMNANQLSE  540
SDTNDEGDEI YNFRRDHQQA AARKSLVTHA IKAVLMQVED TKEAVEVLPR NSPPKLEAEP  600
SCPKYFRESR KGAVEMREML KPHQWYKADN ETLESESDCD FADDEMSPAI RLSTDAAWKD  660
DENLLRELSQ FHGGPISELR DYCAQNSNLR VNDLNMADRD AFERGRPPLS EPAIDIPVPS  720
TRESRSDSKR EVPKDVIMVQ TERSKANADT AASCEQKYVD KLYKPTRFRT PTSELTGEAI  780
AGDPPSESKG HLDELLEQIL DTHMDNVRQN DAKQHQSNDI DEEKLKEIGK SNLDKWLQVL  840
LFKDAESPCS SPGRGTPLQA TSPALSSMSV AVMRESLERA RQQELMSRDD ENVEGPKSLW  900
GALLRKMSAK QQLEYESAVF EPKEDYDIVD EARSSDAVKP LPKISPTTDL ATKQKPVSGA  960
LTEGRGSGCD SDCALPGRSG GNQLDSIVSN LRPKDANIGS ANEPNPLAND SSVSRKTDRR  1020
VEDGVLETQP SSFEKRHSPR PLSDVEETSE TESTDNLNQR SKVPTPEIKH PHGSKIRSIK  1080
VAAFVGWKKS SKSKPMIKSS HVDEVAQLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024363027.1	0.0	uncharacterized protein LOC112276173 isoform X1
Refseq	XP_024363028.1	0.0	uncharacterized protein LOC112276173 isoform X1
TrEMBL	A0A2K1IJV9	0.0	A0A2K1IJV9_PHYPA; Uncharacterized protein
STRING	PP1S152_10V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Link Out ? help Back to Top
Phytozome	Pp3c23_18290V3.4.p