PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c23_14630V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20383.6 Da PI: 7.7883 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 4.2e-42 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da+sslvyeA+ar+rdPvyG++g i++lqqq + l+ Pp3c23_14630V3.3.p 11 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPENQRADAASSLVYEANARIRDPVYGCMGAISALQQQAQALQ 101 7****************************************************************************************** PP DUF260 92 aelallkeel 101 ael+++++e+ Pp3c23_14630V3.3.p 102 AELSAVRQEI 111 ******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.454 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-42 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MLSSQGQGST PCAACKLLRR RCAQECPFSP YFSPHEPQKF ACVHKIFGAS NVSKMLMEVP 60 ENQRADAASS LVYEANARIR DPVYGCMGAI SALQQQAQAL QAELSAVRQE ITRYRQHDSS 120 PTDSAPATTT TSASALVSGY QKQVRERGST SDTQSSKPST SEVYTTVQSP SSTVATSESN 180 DAPYWSSIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-47 | 3 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-47 | 3 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13404 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362454.1 | 1e-137 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 2e-60 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2K1IJC4 | 1e-136 | A0A2K1IJC4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S156_26V6.1 | 1e-137 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-56 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c23_14630V3.3.p |
Publications ? help Back to Top | |||
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