PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_9950V3.3.p | ||||||||
Common Name | PHYPADRAFT_84275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 682aa MW: 75462 Da PI: 6.3784 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 49 | 135 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k++ ++ + l lp++f+ +++g s ++le + ++W+v+l +++++ + +++GW++Fv ++ L++gD +vF l ++s f Pp3c22_9950V3.3.p 49 LKTM---TESTIDTLKLPRSFLLDNSGR--LSDSVILEGPCREQWRVEL--HGYGQSfnVSFGQGWSKFVVDHVLQVGDHLVFFLLQKSYF- 132 5555...344556688*********877..7778***************..7777666699**********************98876766. PP .EEE CS B3 92 lvvk 95 v Pp3c22_9950V3.3.p 133 -QVE 135 .444 PP | |||||||
2 | B3 | 55.2 | 1.3e-17 | 285 | 374 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+t+s+v + +l++pk+f ++ + e+k++tl+++sg +W k ++g+ l++GW++F +++L+e D++v++l+++ + l+v Pp3c22_9950V3.3.p 285 VVMTKSHVYRGFLLSIPKRFSKDWL-P-SETKEVTLTNKSGHTWPAKW--LASQGG--LSAGWRRFSLDHRLEEHDVCVLELVDKANLVLLV 370 5899****************97774.3.45679***************..788777..9************************999999999 PP EEE- CS B3 95 kvfr 98 ++fr Pp3c22_9950V3.3.p 371 HIFR 374 9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-19 | 43 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-21 | 43 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.492 | 45 | 140 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.95E-20 | 46 | 138 | No hit | No description |
SMART | SM01019 | 3.3E-12 | 48 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-11 | 49 | 133 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-19 | 280 | 374 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.7E-15 | 283 | 376 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-21 | 283 | 376 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.844 | 283 | 376 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-16 | 285 | 374 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.17E-23 | 286 | 374 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MKKVCEECRR NCLRLHGAEE DDVHPNLLCT PGGSEADKNV QTDRHPSFLK TMTESTIDTL 60 KLPRSFLLDN SGRLSDSVIL EGPCREQWRV ELHGYGQSFN VSFGQGWSKF VVDHVLQVGD 120 HLVFFLLQKS YFQVEVYDGF GVQKRSALDA VNTPLKTNTK NVDVVQQSLD LDHGVVQTEQ 180 KKPESATQPE NAAQPLIDLI QSSESESMLM SARKIDMIIA EALRSEDSGH PIMKSPEVEK 240 RKVLPPHVLV NGTVTSKRRP VTELEKARAL QAASSLELVK PNVLVVMTKS HVYRGFLLSI 300 PKRFSKDWLP SETKEVTLTN KSGHTWPAKW LASQGGLSAG WRRFSLDHRL EEHDVCVLEL 360 VDKANLVLLV HIFRVLGSPE EDEGLYFPTN SAVKAFDGKR NISNSPQVHD DHKGVSPYGN 420 GSESDKKGSE HSSRGSDGLN DKSTSEPDKM TNSLKRKICV LGLEALPDKT KALGDQSHRE 480 TGTAAIHDVQ AAEPDLGVRT RDPCGAELRP TAARQDLVDF RSTLMKLTKD LLVKNGVGSI 540 VPAKGVLPGN PAANADDVHE QLTNFVDFPT TKRQHTLPSV SQEGDGKDQS GEDNANLADA 600 PIPEQHTPSV RHERPRKELG QEYKVVHIYK GRSVGTSTEF LAELEGYSES IVSKLPRDDD 660 TGFLWVPSNQ FSWDMQTCCI E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-16 | 253 | 375 | 19 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-16 | 253 | 375 | 19 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360464.1 | 0.0 | uncharacterized protein LOC112274872 | ||||
TrEMBL | A0A2K1IMZ2 | 0.0 | A0A2K1IMZ2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S121_146V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_9950V3.3.p |
Entrez Gene | 5933293 |
Publications ? help Back to Top | |||
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