PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_9950V3.3.p
Common NamePHYPADRAFT_84275
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 682aa    MW: 75462 Da    PI: 6.3784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_9950V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-1349135295
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        +k++     ++ + l lp++f+ +++g    s  ++le +  ++W+v+l   +++++  + +++GW++Fv ++ L++gD +vF l ++s f 
  Pp3c22_9950V3.3.p  49 LKTM---TESTIDTLKLPRSFLLDNSGR--LSDSVILEGPCREQWRVEL--HGYGQSfnVSFGQGWSKFVVDHVLQVGDHLVFFLLQKSYF- 132
                        5555...344556688*********877..7778***************..7777666699**********************98876766. PP

                        .EEE CS
                 B3  92 lvvk 95 
                          v 
  Pp3c22_9950V3.3.p 133 -QVE 135
                        .444 PP
2B355.21.3e-17285374398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v+t+s+v +  +l++pk+f ++   +  e+k++tl+++sg +W  k     ++g+  l++GW++F  +++L+e D++v++l+++ +  l+v
  Pp3c22_9950V3.3.p 285 VVMTKSHVYRGFLLSIPKRFSKDWL-P-SETKEVTLTNKSGHTWPAKW--LASQGG--LSAGWRRFSLDHRLEEHDVCVLELVDKANLVLLV 370
                        5899****************97774.3.45679***************..788777..9************************999999999 PP

                        EEE- CS
                 B3  95 kvfr 98 
                        ++fr
  Pp3c22_9950V3.3.p 371 HIFR 374
                        9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-1943138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2143139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.49245140IPR003340B3 DNA binding domain
CDDcd100171.95E-2046138No hitNo description
SMARTSM010193.3E-1248140IPR003340B3 DNA binding domain
PfamPF023627.0E-1149133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-19280374IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-15283376IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-21283376IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.844283376IPR003340B3 DNA binding domain
PfamPF023625.1E-16285374IPR003340B3 DNA binding domain
CDDcd100172.17E-23286374No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MKKVCEECRR NCLRLHGAEE DDVHPNLLCT PGGSEADKNV QTDRHPSFLK TMTESTIDTL  60
KLPRSFLLDN SGRLSDSVIL EGPCREQWRV ELHGYGQSFN VSFGQGWSKF VVDHVLQVGD  120
HLVFFLLQKS YFQVEVYDGF GVQKRSALDA VNTPLKTNTK NVDVVQQSLD LDHGVVQTEQ  180
KKPESATQPE NAAQPLIDLI QSSESESMLM SARKIDMIIA EALRSEDSGH PIMKSPEVEK  240
RKVLPPHVLV NGTVTSKRRP VTELEKARAL QAASSLELVK PNVLVVMTKS HVYRGFLLSI  300
PKRFSKDWLP SETKEVTLTN KSGHTWPAKW LASQGGLSAG WRRFSLDHRL EEHDVCVLEL  360
VDKANLVLLV HIFRVLGSPE EDEGLYFPTN SAVKAFDGKR NISNSPQVHD DHKGVSPYGN  420
GSESDKKGSE HSSRGSDGLN DKSTSEPDKM TNSLKRKICV LGLEALPDKT KALGDQSHRE  480
TGTAAIHDVQ AAEPDLGVRT RDPCGAELRP TAARQDLVDF RSTLMKLTKD LLVKNGVGSI  540
VPAKGVLPGN PAANADDVHE QLTNFVDFPT TKRQHTLPSV SQEGDGKDQS GEDNANLADA  600
PIPEQHTPSV RHERPRKELG QEYKVVHIYK GRSVGTSTEF LAELEGYSES IVSKLPRDDD  660
TGFLWVPSNQ FSWDMQTCCI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1625337519142B3 domain-containing transcription factor VRN1
4i1k_B1e-1625337519142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360464.10.0uncharacterized protein LOC112274872
TrEMBLA0A2K1IMZ20.0A0A2K1IMZ2_PHYPA; Uncharacterized protein
STRINGPP1S121_146V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-21B3 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]