PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_9250V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HSF
Protein Properties Length: 405aa    MW: 45295.8 Da    PI: 7.1521
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_9250V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.2e-34261172102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++e++sw e++++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  e+         weF+ + F++g+++l
  Pp3c22_9250V3.1.p  26 FLTKTYHLVNDPSTNEIVSWGETNTTFVVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFASDFFRRGERHL 108
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  Pp3c22_9250V3.1.p 109 LCEIHRRKA 117
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.4E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSLSFDNSET GCMLLFDCHR SIPAPFLTKT YHLVNDPSTN EIVSWGETNT TFVVWRPPEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKIV PERWEFASDF FRRGERHLLC EIHRRKALQP  120
VSVTGSVQQS RSLSPTSIED QAWSSITSAM PSPLQIIVPT HQNVTTIGVS DEMEKLRKDN  180
NMLLSEVSRL SRLYEEAMAI IQHQNFKGSS PDLITYSRIG ASGQSIDRTA SAPLPGEPAI  240
HQQFVGPVVR MEGFRELSSV HTRTTNFDPY RSPLLPTSAI QEKPSNESII SGDSKPTSLC  300
VKPTEAASSS NTSNETTPEG TRVTVKLFGV PLHGQAGDPG SFNHEASEVG MKRHQPESWD  360
TVYNPGSPRK YLRLETTPES RPSTPQQQVP WLQISATRDE GVYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222111525129Heat shock factor protein 1
5d5v_B1e-222111525129Heat shock factor protein 1
5d5v_D1e-222111525129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.167001e-163protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361198.10.0heat shock factor protein HSF24-like isoform X1
TrEMBLA0A2K1IMW00.0A0A2K1IMW0_PHYPA; Uncharacterized protein
STRINGPP1S12_41V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-65heat shock transcription factor B4