PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pp3c22_6370V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1263aa MW: 135010 Da PI: 7.4669

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_6370V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	777	827	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c22_6370V3.2.p 777 EKTIGLNVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 827 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	761	847	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-25	780	827	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.7E-19	1175	1257	No hit	No description
SuperFamily	SSF54277	5.56E-19	1175	1257	No hit	No description
SMART	SM00666	6.3E-16	1178	1260	IPR000270	PB1 domain
PROSITE profile	PS51745	21.154	1178	1260	IPR000270	PB1 domain
Pfam	PF00564	6.3E-14	1179	1256	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1263 aa Download sequence Send to blast
MELLRSNPRC GPRTRRTTEC GGHGQQQATG ATRVVVAGGL GGGSAGEAKF VMDETVLMDL 60 MELDSLSEQL LGETWAGDNH GDYGSYLAYP ASCNGGMFAA AGPPPVSQSA QMYSYGNGSM 120 AASLQAFQQE LMLQQVVESC QQSIPVASSS PPSLPLSSAP VSGISSYGAA VGSRLLSSSS 180 PSPSGTARTM PGNQSLAGMI TGDGRGVGDP RGGVGGRSGV AEIRESGVVD REEEKSSLST 240 VEGNPVSSGN LEAGVRGPRI SAGFPLPLRD RMMQALRLIG RSLKDELVQV WMPVVQGTRK 300 CLMTRDQPFT VEPRNEQLWV YRSMSESYEF PAERVEGKVL GLPGRVFIGQ KVEWTPNVQY 360 YSIQEYLRVK EAQRCDIRGS LAVPVLDPVS HQCVAVIELV GRAEKVQYGP DVDIIARALQ 420 AVNLTCPVGL ETPPLERSSW GRQAALSEMA DVLKAVCEAH RLPFAQTWVP TCSYGSRSDA 480 KAQGNNAEQV NGRCSRSKVV LRTVDGDGPC YVSDSRMLGF RRACLEHVLE KGQGVPGKAM 540 LTNLPVFDSD VKSFSKDEYP LGHYAKLFGL VSAVAIRLRS VHSGDEDFIL EFFLPTDCVD 600 SEKQQVMLNS LSITMQRICQ SLRTLSEKEL EEERREALAE SMEMQAKAVK EEAKEVSNKE 660 DLLAAYGFNR HPGGGNGCEE TTQAFPQVLQ HHGVQQAAAR CAVQRPPLQQ FSRGMPTGRG 720 CEEGLRILES HVYPWHHHPE QMGLEHGLGT GGFGCSSLHQ DVASHRRRFE RRRGTTEKTI 780 GLNVLQQYFA GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVSRS LKKLQGVIDS 840 VQGAEGALRI NALTGDLSSA AVAAAAVNGH MNKDMAASSQ GNLSVSWSTP SLNSLDVKEA 900 HGKLGSAEPL LGPKEESRRR HDPCSPQKLL LSMLKPTLQF RPEDDRIVSS LEVNAMSGAS 960 GGHGRVQLDN GDICRSNDRS SVSNIGSNPN VKAAYGSNGG HCRPGMSPLA SGGILSSADT 1020 DRGCEGGHGG NRSSGNACQD VGNAGKVNGG GKGQQASPLG RPLEHLVPGR GGPGRPGDFI 1080 KAATSRGWNE SRVHGGGGAM AALKGVDQYA LYGPVDDPVS SCNHANGGED EVTGRPGLCS 1140 LDSPGFGSSP ASDCSSPSSG VNGTSNKKAW RGREDSAAIT VKVTYGLDTV RVKFAQNVSF 1200 VELKEEVGRR LKLAGQNFNL KYLDDDEEWM LLACDADLQE SIDLMRVSGR HAIKLMICSN 1260 ML*

Sequence ? help Back to Top

Protein Sequence Length: 1263 aa Download sequence Send to blast

MELLRSNPRC GPRTRRTTEC GGHGQQQATG ATRVVVAGGL GGGSAGEAKF VMDETVLMDL  60
MELDSLSEQL LGETWAGDNH GDYGSYLAYP ASCNGGMFAA AGPPPVSQSA QMYSYGNGSM  120
AASLQAFQQE LMLQQVVESC QQSIPVASSS PPSLPLSSAP VSGISSYGAA VGSRLLSSSS  180
PSPSGTARTM PGNQSLAGMI TGDGRGVGDP RGGVGGRSGV AEIRESGVVD REEEKSSLST  240
VEGNPVSSGN LEAGVRGPRI SAGFPLPLRD RMMQALRLIG RSLKDELVQV WMPVVQGTRK  300
CLMTRDQPFT VEPRNEQLWV YRSMSESYEF PAERVEGKVL GLPGRVFIGQ KVEWTPNVQY  360
YSIQEYLRVK EAQRCDIRGS LAVPVLDPVS HQCVAVIELV GRAEKVQYGP DVDIIARALQ  420
AVNLTCPVGL ETPPLERSSW GRQAALSEMA DVLKAVCEAH RLPFAQTWVP TCSYGSRSDA  480
KAQGNNAEQV NGRCSRSKVV LRTVDGDGPC YVSDSRMLGF RRACLEHVLE KGQGVPGKAM  540
LTNLPVFDSD VKSFSKDEYP LGHYAKLFGL VSAVAIRLRS VHSGDEDFIL EFFLPTDCVD  600
SEKQQVMLNS LSITMQRICQ SLRTLSEKEL EEERREALAE SMEMQAKAVK EEAKEVSNKE  660
DLLAAYGFNR HPGGGNGCEE TTQAFPQVLQ HHGVQQAAAR CAVQRPPLQQ FSRGMPTGRG  720
CEEGLRILES HVYPWHHHPE QMGLEHGLGT GGFGCSSLHQ DVASHRRRFE RRRGTTEKTI  780
GLNVLQQYFA GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVSRS LKKLQGVIDS  840
VQGAEGALRI NALTGDLSSA AVAAAAVNGH MNKDMAASSQ GNLSVSWSTP SLNSLDVKEA  900
HGKLGSAEPL LGPKEESRRR HDPCSPQKLL LSMLKPTLQF RPEDDRIVSS LEVNAMSGAS  960
GGHGRVQLDN GDICRSNDRS SVSNIGSNPN VKAAYGSNGG HCRPGMSPLA SGGILSSADT  1020
DRGCEGGHGG NRSSGNACQD VGNAGKVNGG GKGQQASPLG RPLEHLVPGR GGPGRPGDFI  1080
KAATSRGWNE SRVHGGGGAM AALKGVDQYA LYGPVDDPVS SCNHANGGED EVTGRPGLCS  1140
LDSPGFGSSP ASDCSSPSSG VNGTSNKKAW RGREDSAAIT VKVTYGLDTV RVKFAQNVSF  1200
VELKEEVGRR LKLAGQNFNL KYLDDDEEWM LLACDADLQE SIDLMRVSGR HAIKLMICSN  1260
ML*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16950	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361103.1	0.0	protein NLP1-like
TrEMBL	A0A2K1IMF8	0.0	A0A2K1IMF8_PHYPA; Uncharacterized protein
STRING	PP1S12_320V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	5e-89	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_6370V3.2.p