PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_5950V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 26086.4 Da PI: 8.3731 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.8 | 5e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+ye++ar++dPvyG+vg i+ lq+q++ql++ Pp3c22_5950V3.1.p 8 PCAACKFLRRKCTEECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHRREDAVNSLAYESDARVKDPVYGCVGAISVLQRQVAQLQT 99 7******************************************************************************************* PP DUF260 93 elallkee 100 el+ +++ Pp3c22_5950V3.1.p 100 ELSIAHSD 107 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.644 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MASSSSFPCA ACKFLRRKCT EECVFAPYFP PDQPHKFANV HKIFGASNIT KLLNELPTHR 60 REDAVNSLAY ESDARVKDPV YGCVGAISVL QRQVAQLQTE LSIAHSDLAR YTGGASSSLG 120 IGTGLLPGQV YREHMLTREQ LMDLARGDPS HLSREHLMEL ARAGVNSYEA LQALGLSGAL 180 GPLGPFPSSS RLVGESANRS GGGGGGGSGA SGSTIGGQIP SPQWTRGGKS YVLACAMSST 240 LNNSASIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-59 | 8 | 124 | 11 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-59 | 8 | 124 | 11 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13487 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360127.1 | 0.0 | protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Swissprot | Q9FML4 | 3e-59 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2K1IMF3 | 0.0 | A0A2K1IMF3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S12_355V6.1 | 1e-166 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-61 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_5950V3.1.p |
Publications ? help Back to Top | |||
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