PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_5870V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 394aa MW: 42606.2 Da PI: 8.786 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.6e-39 | 60 | 120 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++ Pp3c22_5870V3.9.p 60 PDQVIACPRCQSLNTKFCYYNNYSLTQPRHFCKSCRRYWTAGGTLRNVPVGGGCRKNKRTK 120 68899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 58 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-33 | 61 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.217 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MVNVEKPHMS VAVLGHGDWA MIPSSSSHEP QQQTQQHQQE KKASQLFAQR ALQERRLKPP 60 DQVIACPRCQ SLNTKFCYYN NYSLTQPRHF CKSCRRYWTA GGTLRNVPVG GGCRKNKRTK 120 PRTPEGSNSG TGSADVDSMS SSGLQHPGFT PTSIGFLSSS EGSPYGLADP SIRADSSMSQ 180 SSKIGLPMPY QPGGQSSALA QHQQLHPFEG GIPGLGFFRN PGRVAETALN LHPTFQMPTG 240 DLSEMFDTSS VSRTGALAAL SEGLGTFNVN AEGGRDQQGF VSLERWQQAA KQHSSSGMWG 300 SHEIAQAQSN IGMGRQQDVK GKMTLGLVPI TGMDTSKGQQ QQRPTPSWQH SNPPENSGLH 360 FEQQPEQNYW NNSGGWPSMD SQAYQSSGGG QAL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8678 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361202.1 | 0.0 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361204.1 | 0.0 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361205.1 | 0.0 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361206.1 | 0.0 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361207.1 | 0.0 | dof zinc finger protein 3-like | ||||
TrEMBL | A0A2K1IMF0 | 0.0 | A0A2K1IMF0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S12_364V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_5870V3.9.p |