PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2550V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 346aa    MW: 39764.1 Da    PI: 4.5941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2550V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-18137224196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k + +s++++s +l +p +f++e +  +  + + +lede+g++We  +    ++++  +t+GW++F  +n+L++gD ++F+l++  +f  
  Pp3c22_2550V3.1.p 137 FVKPMQHSNTSNSFWLGIPADFCKERM--PLADEKFILEDENGKEWECLY--LAHKEG--ITGGWRKFLLDNELEDGDCCIFELKSPLRF-- 220
                        899********************9995..334558***************..777777..9**********************9765555.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        +v+v
  Pp3c22_2550V3.1.p 221 KVHV 224
                        6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-25132227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-21133226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-23135226No hitNo description
SMARTSM010192.1E-17137228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902137228IPR003340B3 DNA binding domain
PfamPF023622.3E-15137224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYRFICRGGG WSVCLVGGDE MAAMSYEEAR KQRMDENKRR MEELGLVDLS KNLKQLKPKI  60
PAKKPEKRKI DSQEARRSSR VASKPVVSYK EQLDRVRGIR ETRVKKSSSR RKLTESARMA  120
TIEAANEVIK GIEYPAFVKP MQHSNTSNSF WLGIPADFCK ERMPLADEKF ILEDENGKEW  180
ECLYLAHKEG ITGGWRKFLL DNELEDGDCC IFELKSPLRF KVHVLKWDEE DNDLEELVGK  240
KSSKAVTKKK SGKRKARRFE IEDGEEDEDE EDEEDDDDDE EFDSDICDDD SDSHEDDEDS  300
EDDYSPRLTE KEVDTLVAAP SRVSRVPKRK TAEEDDDDSE GHTTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.103506e-49protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360739.10.0B3 domain-containing protein Os03g0184500-like
TrEMBLA0A2K1IM070.0A0A2K1IM07_PHYPA; Uncharacterized protein
STRINGPP1S162_7V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-37B3 family protein