PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_2550V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 346aa MW: 39764.1 Da PI: 4.5941 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.9e-18 | 137 | 224 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k + +s++++s +l +p +f++e + + + + +lede+g++We + ++++ +t+GW++F +n+L++gD ++F+l++ +f Pp3c22_2550V3.1.p 137 FVKPMQHSNTSNSFWLGIPADFCKERM--PLADEKFILEDENGKEWECLY--LAHKEG--ITGGWRKFLLDNELEDGDCCIFELKSPLRF-- 220 899********************9995..334558***************..777777..9**********************9765555.. PP EEEE CS B3 93 vvkv 96 +v+v Pp3c22_2550V3.1.p 221 KVHV 224 6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-25 | 132 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 133 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-23 | 135 | 226 | No hit | No description |
SMART | SM01019 | 2.1E-17 | 137 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-15 | 137 | 224 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MYRFICRGGG WSVCLVGGDE MAAMSYEEAR KQRMDENKRR MEELGLVDLS KNLKQLKPKI 60 PAKKPEKRKI DSQEARRSSR VASKPVVSYK EQLDRVRGIR ETRVKKSSSR RKLTESARMA 120 TIEAANEVIK GIEYPAFVKP MQHSNTSNSF WLGIPADFCK ERMPLADEKF ILEDENGKEW 180 ECLYLAHKEG ITGGWRKFLL DNELEDGDCC IFELKSPLRF KVHVLKWDEE DNDLEELVGK 240 KSSKAVTKKK SGKRKARRFE IEDGEEDEDE EDEEDDDDDE EFDSDICDDD SDSHEDDEDS 300 EDDYSPRLTE KEVDTLVAAP SRVSRVPKRK TAEEDDDDSE GHTTT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10350 | 6e-49 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360739.1 | 0.0 | B3 domain-containing protein Os03g0184500-like | ||||
TrEMBL | A0A2K1IM07 | 0.0 | A0A2K1IM07_PHYPA; Uncharacterized protein | ||||
STRING | PP1S162_7V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-37 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_2550V3.1.p |