PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_2200V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 824aa    MW: 89681 Da    PI: 5.3195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_2200V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019208230123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C++C++ F +  +L+ H + H
  Pp3c22_2200V3.3.p 208 YRCGICNEDFESAKSLNLHKKFH 230
                        9*******************998 PP
2zf-C2H2157e-05279298221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk Fs++  L  H+r
  Pp3c22_2200V3.3.p 279 PCTECGKEFSSWKALFGHMR 298
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.021208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93208230IPR007087Zinc finger, C2H2
SuperFamilySSF576676.1E-9208230No hitNo description
PfamPF139120.014208232IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
SuperFamilySSF576676.1E-9273300No hitNo description
SMARTSM003550.0052278300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18278305IPR007087Zinc finger, C2H2
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4280300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.8E-8280302IPR007087Zinc finger, C2H2
SMARTSM003550.61537559IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.4E-6537559No hitNo description
PROSITE profilePS501579.93537564IPR007087Zinc finger, C2H2
PfamPF139123.4E-8537561IPR007087Zinc finger, C2H2
PROSITE patternPS000280539559IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-6631658No hitNo description
PfamPF139125.1E-13635660IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494636663IPR007087Zinc finger, C2H2
SMARTSM003550.43636658IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280638658IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MEEKALEKAD RELDCVEMST DQVSRGTDQE RGMDLEQEER RGAISVSDNA RNSDPSAACK  60
TKEEEDFGVS VGELGELIER ESGTEDYGHQ AEVSSSRGNV SVTNQDSESL IHEGSLDRPL  120
SRPRRSHGLR KLNTAKTRSS SLSSQRSGKC SPSQDLLSGA TPDSKGTRKR GEDAEEVRQF  180
SSSEELNGDG DRERDGDGDG DEVDGTGYRC GICNEDFESA KSLNLHKKFH PQYTLRRNPK  240
RSRKLMDQEF TVDVGAAVPV QASAPTKKTS SMSEEFPKPC TECGKEFSSW KALFGHMRCH  300
PEREWRGIQP PSEKNNPGGQ GSGPHAAGGV GNHTNFRRKK PSPVAQLPPP LAPPPVVTHP  360
DDVNEKSGSF DSRRAFVAGK ASDNESDTES IEAAYMSNGD RHTVMGWQTG KRSKRSRQTH  420
RSLDAVNSAK KELSNCRDSA ANMAESNDMI EALMLLQAAN RSRERLTVTS TPESHGSKSR  480
SKSITPESGL EAGTEEILQR ERKTKMETEA VSLCGDTEDG ADEFDAGEQG SCARSKYECA  540
TCKRQFKSHQ ALGGHRASHK KVKGCFARTN VNDGGANEQS LESMDADDEE FLKSEEQFPN  600
DFQETSHNSE EDKSCYLTTA RDDEEALYAA RKAKAHECSI CHRVFNSGQA LGGHKRCHWG  660
GSGSGSLGAN EVMSAKPVQA GQQQQSSSRP LKESVLDLNL PAPECVEEEE IAQQQEGEAG  720
AAPMNYMPVP SLNFFNIINN PGRSAYGDAV GQQGQGQQQQ QHAAFLQGEE SSSNNQVENR  780
MEGINQFTSF ERACGPLDTI TAHPKPHVVA TMALVPGLTP TSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2951e-148protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360932.10.0zinc finger protein 646-like isoform X4
TrEMBLA0A2K1ILZ00.0A0A2K1ILZ0_PHYPA; Uncharacterized protein
STRINGPP1S162_50V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein