PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_20610V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 833aa    MW: 94826.5 Da    PI: 9.4122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_20610V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.6e-111191891186
                         HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         + ++ +++p kf+eeh  ++   ++  ++le +s ++W+ +      s+r +l +GW  F++++ L+e+D + F+l++
  Pp3c22_20610V3.1.p 119 SPQSAVCIPTKFVEEHpdMLR--KGNFIILEGPSKNQWNARA-----SNRPILYAGWLAFAHDHCLREKDQLCFYLIK 189
                         4456799*********76444..5668***************.....55569***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-16103199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-13104199IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-16106199No hitNo description
SMARTSM010191.3E-4107201IPR003340B3 DNA binding domain
PROSITE profilePS508639.375126201IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-13700802IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-11702802IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-12704802No hitNo description
SMARTSM010190.27706804IPR003340B3 DNA binding domain
PROSITE profilePS508638.445706804IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MISDKYVYNT SKLNSLLHWS FSSRVFRGMI CHEDARHASP HITRPVHSWV ILSWVSLPRT  60
YIANRVSAEC LSSVHVMSDT RCSAGGCTED LGDFHEKKFD RERCLHFTKS LQKWSLHHSP  120
QSAVCIPTKF VEEHPDMLRK GNFIILEGPS KNQWNARASN RPILYAGWLA FAHDHCLREK  180
DQLCFYLIKP LYFVVEVLNS YGNVRESALM ATITGKYALA PVLITPRTPR QECRKRKNLE  240
ICGPPTQISQ DVPGHRMTFE TIAERCKVTA RRGCYNGYAP GAIKRFSNNT KQWECHEEKD  300
GRQVVTILDS SDEEKDERYR QFSFGSAQMQ RYKPSKIQRL IKYPKDKGAS VLHKSKPPTQ  360
HVDEVNGGKF VRNAMPVEEI VAGKRQTPKS IMIDKPGHES ERKNLNFSGD SLTCQAPGSR  420
VQDVMMRKLE EKIYIGALGH SNDAEHKNTL KTTWVACERE LVKIDDGMSK YHSIAPIKTT  480
CIHSSKIGSA VNMQKSMTFV WEPMGYVSAH GKNRNTKGAA FYGIRRLPTH TRNFDSDIKM  540
DPGFSHGATE NTRGDKRELQ KEMQITNRLA PRLQSEDMPT EMDSETVTHV TESPSQLQLE  600
SRDKTDSIKM LSSQEFKQFT NIVNAVSCRM IFSTFREKDS TNLNQASLPR FCATGLPTLK  660
TTSVIETNST TLCALKSRRG LVAKIDRERT LRAAEAWTMK LRIPHFVVVM KGYHSCTDFN  720
MDIPAEFAKS KLPATEAKMT LMCDEVPTTC KTIWEGTKPM NPKISATGWM DFSRSHFLEE  780
GDVCMFELFN NITVRIGVHI FRVVELRRSQ RGVDWTQHYK VVEANLPHHP SN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1IP640.0A0A2K1IP64_PHYPA; Uncharacterized protein
STRINGPP1S225_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-07B3 family protein