PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c22_20610V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 833aa MW: 94826.5 Da PI: 9.4122 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.5 | 3.6e-11 | 119 | 189 | 11 | 86 |
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + ++ +++p kf+eeh ++ ++ ++le +s ++W+ + s+r +l +GW F++++ L+e+D + F+l++ Pp3c22_20610V3.1.p 119 SPQSAVCIPTKFVEEHpdMLR--KGNFIILEGPSKNQWNARA-----SNRPILYAGWLAFAHDHCLREKDQLCFYLIK 189 4456799*********76444..5668***************.....55569***********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-16 | 103 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-13 | 104 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-16 | 106 | 199 | No hit | No description |
SMART | SM01019 | 1.3E-4 | 107 | 201 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.375 | 126 | 201 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.51E-13 | 700 | 802 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-11 | 702 | 802 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-12 | 704 | 802 | No hit | No description |
SMART | SM01019 | 0.27 | 706 | 804 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.445 | 706 | 804 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 833 aa Download sequence Send to blast |
MISDKYVYNT SKLNSLLHWS FSSRVFRGMI CHEDARHASP HITRPVHSWV ILSWVSLPRT 60 YIANRVSAEC LSSVHVMSDT RCSAGGCTED LGDFHEKKFD RERCLHFTKS LQKWSLHHSP 120 QSAVCIPTKF VEEHPDMLRK GNFIILEGPS KNQWNARASN RPILYAGWLA FAHDHCLREK 180 DQLCFYLIKP LYFVVEVLNS YGNVRESALM ATITGKYALA PVLITPRTPR QECRKRKNLE 240 ICGPPTQISQ DVPGHRMTFE TIAERCKVTA RRGCYNGYAP GAIKRFSNNT KQWECHEEKD 300 GRQVVTILDS SDEEKDERYR QFSFGSAQMQ RYKPSKIQRL IKYPKDKGAS VLHKSKPPTQ 360 HVDEVNGGKF VRNAMPVEEI VAGKRQTPKS IMIDKPGHES ERKNLNFSGD SLTCQAPGSR 420 VQDVMMRKLE EKIYIGALGH SNDAEHKNTL KTTWVACERE LVKIDDGMSK YHSIAPIKTT 480 CIHSSKIGSA VNMQKSMTFV WEPMGYVSAH GKNRNTKGAA FYGIRRLPTH TRNFDSDIKM 540 DPGFSHGATE NTRGDKRELQ KEMQITNRLA PRLQSEDMPT EMDSETVTHV TESPSQLQLE 600 SRDKTDSIKM LSSQEFKQFT NIVNAVSCRM IFSTFREKDS TNLNQASLPR FCATGLPTLK 660 TTSVIETNST TLCALKSRRG LVAKIDRERT LRAAEAWTMK LRIPHFVVVM KGYHSCTDFN 720 MDIPAEFAKS KLPATEAKMT LMCDEVPTTC KTIWEGTKPM NPKISATGWM DFSRSHFLEE 780 GDVCMFELFN NITVRIGVHI FRVVELRRSQ RGVDWTQHYK VVEANLPHHP SN* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1IP64 | 0.0 | A0A2K1IP64_PHYPA; Uncharacterized protein | ||||
STRING | PP1S225_95V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c22_20610V3.1.p |