PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_20520V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22991.9 Da PI: 10.1938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.2 | 9.8e-14 | 107 | 148 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 ++GVr ++ ++Wv eIr s ++++++lg++ t+eeAa+a++ Pp3c22_20520V3.2.p 107 FRGVRHRPELNKWVTEIRPTS---QKRKIWLGTYETPEEAARAYD 148 8***************99942...35******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.791 | 106 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-13 | 106 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-13 | 106 | 162 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-19 | 106 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.49E-16 | 107 | 152 | No hit | No description |
Pfam | PF00847 | 1.1E-9 | 107 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MNLTISSILE HGKPKSKTWW DSCGGSNKGR EQGLLLPSKI DSSRVKKEIE ECKSESSQEG 60 ERKGMRLAAK DNSGRNASRF RNIDLNKMPS AWDTDDASVG TGDTTAFRGV RHRPELNKWV 120 TEIRPTSQKR KIWLGTYETP EEAARAYDVG IFYTKKKIPY NFEDSPQQLQ LHPIPPELPW 180 ESFAALVKQR ATSAAKRARV PSSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11985 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361002.1 | 1e-151 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_024361003.1 | 1e-151 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_024361005.1 | 1e-151 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_024361006.1 | 1e-151 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2K1IP52 | 1e-149 | A0A2K1IP52_PHYPA; Uncharacterized protein | ||||
STRING | PP1S225_102V6.1 | 1e-150 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_20520V3.2.p |