PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_17940V3.1.p

Common Name

PHYPADRAFT_133013

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 260aa MW: 31507.9 Da PI: 5.5287

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_17940V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.5	4e-19	1	65	7	71
trihelix 7 vlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +++ i++r e+e+++ +k++k+lWe + +kmre+gf+rs+ qCk+kw+nl +ryk +++e + Pp3c22_17940V3.1.p 1 TKEFIAIRAELEKDFTLTKRNKTLWELIERKMREKGFRRSADQCKCKWKNLVNRYKGKETSEPDY 65 6899****************************************************999988653 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	6.22E-22	1	59	No hit	No description
Pfam	PF13837	2.5E-16	1	90	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
TKEFIAIRAE LEKDFTLTKR NKTLWELIER KMREKGFRRS ADQCKCKWKN LVNRYKGKET 60 SEPDYEFSQG KDLFDPENGR PCPFFDELDA VFKERARNSE RNLQESEPGS RAKKKGKRGK 120 VKSEDDDDSE DEDDEEESEE DRVVQRKKRK GEKDTNRPRV TAEKYRANSM QEVLEEFFQQ 180 QQKVEEQWRE SVERREQERR WREQEWRDAM EKLEQERIAR EQMWREHEEQ RRIRGEARAL 240 KRDELFAALL TKLAQDEGY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.17731	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024360042.1	1e-173	trihelix transcription factor GT-3b-like, partial
TrEMBL	A0A2K1INX0	0.0	A0A2K1INX0_PHYPA; Uncharacterized protein (Fragment)
STRING	PP1S100_120V6.1	1e-142	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	3e-24	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c22_17940V3.1.p
Entrez Gene	5931351

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]