PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c22_16800V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 272aa MW: 28906.6 Da PI: 6.1732

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c22_16800V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.3	1.8e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql+ Pp3c22_16800V3.4.p 8 PCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQ 98 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++la +++ Pp3c22_16800V3.4.p 99 NDLAIAHSD 107 **99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.012	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MASSSSSPCA ACKFLRRKCT AECVFAPYFP PDQPHKFANV HKIFGASNIT KLLNELPTHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISVL QRQVAQLQND LAIAHSDLAR YAGAGMVVPS 120 VGQGGASSSL GIGISLSQGQ ANREHMLTRE QLMDLARGDP SHLSREHLME LARAGGDLEA 180 KAETGAEAEV EVGAEAELVP AILADKSLHH DGLEPGVVLR ERESYEFGRS VSQISPTTLM 240 LGTLDDSKGS NVKVNFSLRV LGVSSHDSVK C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-60	5	112	8	115	LOB family transfactor Ramosa2.1
5ly0_B	6e-60	5	112	8	115	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024361359.1	1e-127	protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A2K1INT7	1e-126	A0A2K1INT7_PHYPA; Uncharacterized protein
STRING	PP1S71_7V6.1	1e-127	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-59	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Pp3c22_16800V3.4.p