PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_16800V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 24635.6 Da PI: 8.7436 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.7 | 1.3e-45 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp+++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql+ Pp3c22_16800V3.3.p 12 PCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPTHQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQLQ 102 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++la +++ Pp3c22_16800V3.3.p 103 NDLAIAHSD 111 ****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.012 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-44 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKRGMASSSS SPCAACKFLR RKCTAECVFA PYFPPDQPHK FANVHKIFGA SNITKLLNEL 60 PTHQREDAVN SLAYEADARV KDPVYGCVGA ISVLQRQVAQ LQNDLAIAHS DLARYAGAGM 120 VVPSVGQGGA SSSLGIGISL SQGQANREHM LTREQLMDLA RGDPSHLSRE HLMELARAGG 180 GTYETLQALG LSGALGPLRS FPSNSRSGGE SGNRSGGGSG GGGGGGASAS NTGGQIPSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-60 | 11 | 116 | 10 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-60 | 11 | 116 | 10 | 115 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361359.1 | 1e-174 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A2K1INT7 | 1e-169 | A0A2K1INT7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S71_7V6.1 | 1e-170 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-59 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_16800V3.3.p |