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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_14220V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 576aa MW: 62687.3 Da PI: 6.9102 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.7e-14 | 322 | 373 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P + + +K + a+i+ A+e++k+L+ Pp3c22_14220V3.2.p 322 QRMTHIAVERNRRKQMNEHLAALRALMPGS---YVQKGDQASIVGGAIEFVKELE 373 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.41E-14 | 320 | 377 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 320 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.701 | 321 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 321 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 322 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-10 | 327 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MDYPETVQLS TSRTFWNSHD PTLDPFDETL VSTLAPLEAS CSSTFLFQAT SSTCDNGGDS 60 PVFKRPYQQT MFGESPEGGG ESRGTTESYC INVPAGSTAD SSQFSWFSSS PHFHGAQGVS 120 AFQTQFFESS TSADVRVQLH HQGGGHSQDQ FGTLNSSSAQ ASSITHNAQD LGHGSDYQAF 180 LKPLMRQPSF SRPDSGIQVV TKQLNAKASW QSTLFQTKMA FDQRKNSNKE SLGSPCSVIS 240 GITKVLQGVE PVSSDHMESF GPSTSSAYEE VKNVKFQETP PECEGATQSM LGAQEASGLM 300 NHLRPKRKRS RAPKQGDEVE SQRMTHIAVE RNRRKQMNEH LAALRALMPG SYVQKGDQAS 360 IVGGAIEFVK ELEHLLHCLQ AQKRRRAYND ISTAVIPTSS RIAMPSLDQL CAIQPPFTFQ 420 SPQQRLIDQG PFHLGVPTES LGSNTRNSQL VGFFPPSQLP APPIPLLAPA SSSLLGMNEI 480 VGEAKSDMAS VEVKMVGSDQ AMVKIMAPRR SGQLLRTVVA LESLALTVMH TNITTVHHTV 540 LYSFHVQISL HCRLNVDEVA AALHQTFSSL HSLQF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 333 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360529.1 | 0.0 | transcription factor FAMA-like isoform X1 | ||||
TrEMBL | A0A2K1ING0 | 0.0 | A0A2K1ING0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S71_321V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 3e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_14220V3.2.p |