PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_14220V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 575aa MW: 62559.2 Da PI: 6.9102 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.7e-14 | 322 | 373 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P + + +K + a+i+ A+e++k+L+ Pp3c22_14220V3.1.p 322 QRMTHIAVERNRRKQMNEHLAALRALMPGS---YVQKGDQASIVGGAIEFVKELE 373 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.40E-14 | 320 | 377 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 320 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.701 | 321 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 321 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 322 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-10 | 327 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MDYPETVQLS TSRTFWNSHD PTLDPFDETL VSTLAPLEAS CSSTFLFQAT SSTCDNGGDS 60 PVFKRPYQQT MFGESPEGGG ESRGTTESYC INVPAGSTAD SSQFSWFSSS PHFHGAQGVS 120 AFQTQFFESS TSADVRVQLH HQGGGHSQDQ FGTLNSSSAQ ASSITHNAQD LGHGSDYQAF 180 LKPLMRQPSF SRPDSGIQVV TKQLNAKASW QSTLFQTKMA FDQRKNSNKE SLGSPCSVIS 240 GITKVLQGVE PVSSDHMESF GPSTSSAYEE VKNVKFQETP PECEGATQSM LGAQEASGLM 300 NHLRPKRKRS RAPKQGDEVE SQRMTHIAVE RNRRKQMNEH LAALRALMPG SYVQKGDQAS 360 IVGGAIEFVK ELEHLLHCLQ AQKRRRAYND ISTAVIPTSS RIAMPSLDQL CAIQPPFTFQ 420 SPQRLIDQGP FHLGVPTESL GSNTRNSQLV GFFPPSQLPA PPIPLLAPAS SSLLGMNEIV 480 GEAKSDMASV EVKMVGSDQA MVKIMAPRRS GQLLRTVVAL ESLALTVMHT NITTVHHTVL 540 YSFHVQISLH CRLNVDEVAA ALHQTFSSLH SLQF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 333 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360530.1 | 0.0 | transcription factor FAMA-like isoform X2 | ||||
TrEMBL | A0A2K1ING0 | 0.0 | A0A2K1ING0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S71_321V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 3e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_14220V3.1.p |