PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c22_13810V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 483aa    MW: 50685.9 Da    PI: 7.7955
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c22_13810V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.1e-10298353560
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                         kr++r   NR +A rs +RK  +i eLe+kv+ L+ae k+L  +l +l+ke   l 
  Pp3c22_13810V3.1.p 298 KRAKRILANRQSAARSKERKVRYISELERKVQGLQAEAKTLCAQLAMLQKETGGLA 353
                         9************************************************9976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-15294358IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.634296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.64E-11298352No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-10298352No hitNo description
PfamPF001704.9E-9298353IPR004827Basic-leucine zipper domain
CDDcd147035.61E-22299348No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEGAGKGFDA RFVGRVQSEF GGASGVKGCG STPTINAAAH PPHPTQSQLH QSRYVGYPST  60
PHPFTVKREA SPSVSESSMR SRESYSVEAS MQDAVTSPSP ASVSGSGQGR GMGSLGPNFS  120
TDVNQMPDTP PRRRGHRRAQ SESAFRVADD ASFESEGGVQ GSEIPTVSDD GAEDLFSMYI  180
DMEQINSLIG TSEQAGAMKS GGEGDNAPPP PGHHARSLSV DGGLGNLTGN RTGVGVGVGG  240
GGGSGSMASE GRRARHQHVS SMDGSSCFKH DLFGEFGGDT KKVVASAKLS EIALVDPKRA  300
KRILANRQSA ARSKERKVRY ISELERKVQG LQAEAKTLCA QLAMLQKETG GLATENGELK  360
LRLQAMEQQA HLRDALNEAL REEVQRLKVA TGQVSSGSGQ SLSMGGQHVF QMQSQSFNPQ  420
QLQQAQPASN NAAASAAQQQ QGAQQQMHSD YLQRGAYNVS SGFMKSEEAS MAVSHASSAS  480
FG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360145.10.0transcription factor RF2a-like
RefseqXP_024361110.10.0transcription factor RF2a-like isoform X1
TrEMBLA0A2K1INF20.0A0A2K1INF2_PHYPA; Uncharacterized protein
STRINGPP1S71_364V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-77bZIP family protein