PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c22_130V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 484aa MW: 53475.8 Da PI: 4.9248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.6 | 2.6e-32 | 31 | 173 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.......lelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 p+G+rF+P+deel+ e+L++k+ +++ ++ + ++e +i++++P++Lp vk++ +++++F++ + +y+tg+rk+r+ Pp3c22_130V3.5.p 31 PAGVRFDPSDEELL-EHLAAKIGRSSrkphpflD-EFIhTlVEEDGICRTHPENLP-GVKKDGSSCHYFHRPSMAYTTGTRKRRKiqtddvpd 120 89************.99****9888877776642.22233377779**********.7778899********************856666555 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v + g+ g kk++v+y g+++k kt+Wvmh+y+l Pp3c22_130V3.5.p 121 gGTDVRWHKTGKTRPVSQ-CGKILGHKKIMVLYraMGKKSKNLKTNWVMHQYHL 173 533688**********99.999***********6558999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-36 | 22 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.668 | 30 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-14 | 31 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MDRVASNRIL GASKLRCDNN AAAHVKLDSF PAGVRFDPSD EELLEHLAAK IGRSSRKPHP 60 FLDEFIHTLV EEDGICRTHP ENLPGVKKDG SSCHYFHRPS MAYTTGTRKR RKIQTDDVPD 120 GGTDVRWHKT GKTRPVSQCG KILGHKKIMV LYRAMGKKSK NLKTNWVMHQ YHLGSNEEET 180 DGELVVCKVF FQKAPRSCPS RKMEVLAVDD EDCEPSESDI GFQAPGLSGY SPSVSVVTRG 240 LPPLSPLSCK PSRTAKQLYA EPTESNSEIF DPQLLATQSK QKAVFARSRI NQYNDEGIGE 300 DIGVDMNHKA TACVVYKPGG SLVQTMRAAV YADNQDTHIN GGLSGHLSRE GEDESFQAVN 360 LDEEGSWGLD QVMEAEHIEQ DPSIMGLLCD EHLDGDPLAE DANYEDFNFR SLSYDVGCSV 420 EEELFRVLTG VERSVVDPAL DALELDTPPD MLEYPVVTSQ EVKDWLGKHP ILGLDNTDSQ 480 STT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-14 | 15 | 173 | 3 | 140 | Stress-induced transcription factor NAC1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3847 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361187.1 | 0.0 | uncharacterized protein LOC112275234 isoform X2 | ||||
TrEMBL | A0A2K1ILP6 | 0.0 | A0A2K1ILP6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S251_11V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 8e-74 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c22_130V3.5.p |