PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_7130V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 412aa    MW: 46365.4 Da    PI: 6.8307
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_7130V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.7e-18283369183
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                        f kvl +sdv+++gr+v++kk ae+h     +k  e++ +t+ed  +g++W+++++++ + ++ ++l + + +Fv+a++L  gD++++ 
  Pp3c21_7130V3.7.p 283 FHKVLQTSDVSNLGRIVISKKEAESHlpylAMK--EGILITMEDfDTGQQWTFRYRFWPNCRSrMYLLESTGDFVRAHRLTKGDVLLLW 369
                        89**************************76545..7899*****9999********9777776777777****************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-26275375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-23281375IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-24281378No hitNo description
PfamPF023621.6E-14283370IPR003340B3 DNA binding domain
SMARTSM010193.6E-16283384IPR003340B3 DNA binding domain
PROSITE profilePS508639.671283392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEKNIANIWL QDARGLVRAK VGDEAFFSYC QELESTSLRT PAASPIELTS SKSSTETAEH  60
YDYFDPYLQT EALKGSTQDP TADPISICSE GSITQALEQL LTCKDVLETQ TSWEVDHQKD  120
ELPLHQLPGW TQQDCSLMED WQQNLSCSMS HLESESSSSL IGDTPNHGRQ MITETPVGLF  180
DPTTEDIFPP ANHLSQSATV MSFLGDQILR RPSHIISSKV AAARRHRILL RQKSAPHQRG  240
PSHSNGSGSS PRALKKMYVT KLAKELTCSN GQGHNMDSLR FLFHKVLQTS DVSNLGRIVI  300
SKKEAESHLP YLAMKEGILI TMEDFDTGQQ WTFRYRFWPN CRSRMYLLES TGDFVRAHRL  360
TKGDVLLLWR HSTRGTYRSF ESGIDVKVIR GMSAFPSMHT IEVLKKVKVE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-31279377199B3 domain-containing transcription factor FUS3
6j9b_D2e-31279377199B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.121740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358633.10.0uncharacterized protein LOC112273861 isoform X1
RefseqXP_024358634.10.0uncharacterized protein LOC112273861 isoform X1
RefseqXP_024358636.10.0uncharacterized protein LOC112273861 isoform X1
TrEMBLA0A2K1IQZ50.0A0A2K1IQZ5_PHYPA; Uncharacterized protein
STRINGPP1S278_39V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-33B3 family protein