PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_7130V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 402aa    MW: 45246.1 Da    PI: 6.8304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_7130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.2e-18283379194
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        f kvl +sdv+++gr+v++kk ae+h     +k  e++ +t+ed  +g++W+++++++ + ++ ++l + + +Fv+a++L  gD++++ +++
  Pp3c21_7130V3.2.p 283 FHKVLQTSDVSNLGRIVISKKEAESHlpylAMK--EGILITMEDfDTGQQWTFRYRFWPNCRSrMYLLESTGDFVRAHRLTKGDVLLLWRHS 372
                        89**************************76545..7899*****9999********9777776777777*****************998543 PP

                        SSEE..EE CS
                 B3  87 rsefelvv 94 
                         +++++v+
  Pp3c21_7130V3.2.p 373 -TRGTYVI 379
                        .6665665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-27275380IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-25281380No hitNo description
SuperFamilySSF1019361.11E-23281379IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-16283382IPR003340B3 DNA binding domain
PfamPF023625.2E-15283379IPR003340B3 DNA binding domain
PROSITE profilePS5086310.151283385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEKNIANIWL QDARGLVRAK VGDEAFFSYC QELESTSLRT PAASPIELTS SKSSTETAEH  60
YDYFDPYLQT EALKGSTQDP TADPISICSE GSITQALEQL LTCKDVLETQ TSWEVDHQKD  120
ELPLHQLPGW TQQDCSLMED WQQNLSCSMS HLESESSSSL IGDTPNHGRQ MITETPVGLF  180
DPTTEDIFPP ANHLSQSATV MSFLGDQILR RPSHIISSKV AAARRHRILL RQKSAPHQRG  240
PSHSNGSGSS PRALKKMYVT KLAKELTCSN GQGHNMDSLR FLFHKVLQTS DVSNLGRIVI  300
SKKEAESHLP YLAMKEGILI TMEDFDTGQQ WTFRYRFWPN CRSRMYLLES TGDFVRAHRL  360
TKGDVLLLWR HSTRGTYVIR GMSAFPSMHT IEVLKKVKVE E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-332793841106B3 domain-containing transcription factor FUS3
6j9b_D3e-332793841106B3 domain-containing transcription factor FUS3
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.121740.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358637.10.0uncharacterized protein LOC112273861 isoform X2
TrEMBLA0A2K1IQZ50.0A0A2K1IQZ5_PHYPA; Uncharacterized protein
STRINGPP1S278_39V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-35B3 family protein