PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c21_7130V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 402aa MW: 45246.1 Da PI: 6.8304 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.2e-18 | 283 | 379 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 f kvl +sdv+++gr+v++kk ae+h +k e++ +t+ed +g++W+++++++ + ++ ++l + + +Fv+a++L gD++++ +++ Pp3c21_7130V3.2.p 283 FHKVLQTSDVSNLGRIVISKKEAESHlpylAMK--EGILITMEDfDTGQQWTFRYRFWPNCRSrMYLLESTGDFVRAHRLTKGDVLLLWRHS 372 89**************************76545..7899*****9999********9777776777777*****************998543 PP SSEE..EE CS B3 87 rsefelvv 94 +++++v+ Pp3c21_7130V3.2.p 373 -TRGTYVI 379 .6665665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 275 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-25 | 281 | 380 | No hit | No description |
SuperFamily | SSF101936 | 1.11E-23 | 281 | 379 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.6E-16 | 283 | 382 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-15 | 283 | 379 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.151 | 283 | 385 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEKNIANIWL QDARGLVRAK VGDEAFFSYC QELESTSLRT PAASPIELTS SKSSTETAEH 60 YDYFDPYLQT EALKGSTQDP TADPISICSE GSITQALEQL LTCKDVLETQ TSWEVDHQKD 120 ELPLHQLPGW TQQDCSLMED WQQNLSCSMS HLESESSSSL IGDTPNHGRQ MITETPVGLF 180 DPTTEDIFPP ANHLSQSATV MSFLGDQILR RPSHIISSKV AAARRHRILL RQKSAPHQRG 240 PSHSNGSGSS PRALKKMYVT KLAKELTCSN GQGHNMDSLR FLFHKVLQTS DVSNLGRIVI 300 SKKEAESHLP YLAMKEGILI TMEDFDTGQQ WTFRYRFWPN CRSRMYLLES TGDFVRAHRL 360 TKGDVLLLWR HSTRGTYVIR GMSAFPSMHT IEVLKKVKVE E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-33 | 279 | 384 | 1 | 106 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-33 | 279 | 384 | 1 | 106 | B3 domain-containing transcription factor FUS3 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12174 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024358637.1 | 0.0 | uncharacterized protein LOC112273861 isoform X2 | ||||
TrEMBL | A0A2K1IQZ5 | 0.0 | A0A2K1IQZ5_PHYPA; Uncharacterized protein | ||||
STRING | PP1S278_39V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c21_7130V3.2.p |