PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_6770V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 493aa    MW: 54116.9 Da    PI: 6.8113
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_6770V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.21e-29299351255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +rl+Wtp+LH+rFveav +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c21_6770V3.1.p 299 ARLVWTPQLHKRFVEAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 351
                        79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.644293354IPR017930Myb domain
SuperFamilySSF466892.87E-19296355IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-30297356IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23299351IPR006447Myb domain, plants
PfamPF002491.8E-7301350IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MMTKDDDQVS DWTKGLPTSE ELTPLSHTLI SRILASAFRI KHEEPMTEED VRRESQATIH  60
NLFKQKPIPS FDAFPAFQEH DDAGGYGYGV EGRSSGEEFR GNRRVEEEFR ENRGDEEFRK  120
EFRGNRRTEE RRDGRSLAIE DRMDYRGSAF GSEIPKQTRA SGSDTTTPPK GSMKSNTGAG  180
GSVGQGLQGS VSITATNTGR EHSSTPVGNT RPARYGHGAD TANTHERPIQ PSLPYIMNSL  240
PYGPYERVPE SSYGGPREDE SSRGGGSTDF GRKMADFELE DANSAGGLMN SNDEPLKRAR  300
LVWTPQLHKR FVEAVGHLGI KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS  360
NDGPSASDHL FASMPLPPGI MAPGMNPHFM GSSSSQRDDG GSAFATPIMP MPFQGLVRPG  420
PLGGYEYMPY GPMGGGFMQR APMPDPREAA TENESRSHAS NNRSNKSQSQ SQSHQSLPSS  480
SYQHALPLFP TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-31298354157Transcription factor LUX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.92080.0gametophore| protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359318.10.0uncharacterized protein LOC112274242
RefseqXP_024359319.10.0uncharacterized protein LOC112274242
RefseqXP_024359320.10.0uncharacterized protein LOC112274242
RefseqXP_024359321.10.0uncharacterized protein LOC112274242
TrEMBLA0A2K1IQZ60.0A0A2K1IQZ6_PHYPA; Uncharacterized protein
STRINGPP1S27_359V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.35e-46G2-like family protein