PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c21_440V3.3.p
Common NamePHYPADRAFT_171319
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 675aa    MW: 73834.4 Da    PI: 6.0596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c21_440V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083164183120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       y+C++C++ Fs+  +L+ H 
  Pp3c21_440V3.3.p 164 YRCGICNEEFSSAKSLNFHK 183
                       9******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.62E-8163186No hitNo description
SMARTSM0035512164185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.62E-8229256No hitNo description
SMARTSM003550.029234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
PfamPF139121.8E-6236258IPR007087Zinc finger, C2H2
SMARTSM003550.61472494IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-8472496IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-7472494No hitNo description
PROSITE profilePS501579.93472499IPR007087Zinc finger, C2H2
PROSITE patternPS000280474494IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-7567594No hitNo description
SMARTSM003550.43572594IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-12572596IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307572596IPR007087Zinc finger, C2H2
PROSITE patternPS000280574594IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MPHAWIALTS TCSCMDIDQP GEGDISVVVK GELGEVIERE SGTEDYYLKA EVSSSRGNAS  60
NTNHSTHEGS LDHPLSRLRR SDALCSRIRR VSTAKTRSSS LTSQRSSAKL DPHTGATPDL  120
KVDKDARGIR KRVEDREELR RSSSSEELHG DEDGDGDEVD ATQYRCGICN EEFSSAKSLN  180
FHKCHPQYTL RRNPKRSRKL IDQEVGKEAG AVTTIVQVSA ITKKTSSMTE DFPKSCTECG  240
KEFLSWKALF GHMRCHPERE WRGIQPPAEE SNARGQGSGG NHSSSRRRRP APVLHVHPPP  300
APAREDNVEI SASLNSRRVT HVWSKASDDE SDTESIEAAY MSNGDRDMGY GTTWSTRSKR  360
SRQTHRSLDA VSNAKKEWVP SSQGNIAAES TDMAETLMLL QCNPNMEKLV LMSTPESHGS  420
KSRTPEFGVE SETEDVNLRD AKTEAASPCE DTEECVDEFE AGEQGTSTRP KYECATCKRQ  480
FKSHQALGGH RASHKKVKGC FARTNPDDGG ALDHSMDTSM DADDDSEQHN AKFEEKLLQE  540
LPETSLTSLE EDKAIRADNE EMPTTARKNK SHECSICHRV FNSGQALGGH KRCHWGGGGA  600
AGEVTSAKAV QGQGVQGGQP SRPVKEAVLD LNLPAPEYLE EMMAQGEAEA GSLQLLNYLP  660
AAAAASLSLH PVYA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024358653.10.0uncharacterized protein LOC112273868 isoform X2
TrEMBLA0A2K1IQ910.0A0A2K1IQ91_PHYPA; Uncharacterized protein
STRINGPP1S286_28V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-16C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]